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  • RPL10A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:721.8 nTPM
HPA Brain:275.3 nTPM
GTEx:721.8 nTPM
FANTOM5:17.3 Scaled Tags Per Million
Pig:294.4 nTPM
Mouse:155.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

275.3
Sample id Sample description nTPM
Amygdala
nTPM: 275.1
2695 Female, age 67, right hemisphere 329.0
2514 Male, age 75, right hemisphere 287.0
2517 Female, age 94, left hemisphere 282.6
1987 Female, age 91, left hemisphere 258.8
2814 Male, age 76, right hemisphere 218.4
Basal amygdala
nTPM: 240.2
2827 Female, age 67, right hemisphere 297.9
2609 Male, age 75, right hemisphere 274.2
2685 Female, age 94, left hemisphere 251.3
2110 Male, age 80, left hemisphere 245.0
2243 Female, age 91, right hemisphere 197.0
1955 Male, age 76, both hemispheres 175.6
Central amygdala
nTPM: 266.2
2826 Female, age 94, left hemisphere 407.0
2515 Male, age 75, right hemisphere 299.8
2239 Male, age 80, left hemisphere 230.4
2701 Female, age 91, right hemisphere 197.1
1905 Male, age 76, both hemispheres 196.8
Corticomedial amygdala
nTPM: 234.7
2428 Male, age 75, right hemisphere 267.6
2829 Male, age 80, left hemisphere 254.0
2429 Female, age 94, left hemisphere 243.7
2535 Female, age 67, right hemisphere 238.7
2242 Female, age 91, right hemisphere 224.4
2240 Male, age 76, both hemispheres 179.5
Lateral amygdala
nTPM: 275.3
2830 Female, age 67, right hemisphere 376.4
2516 Male, age 75, right hemisphere 345.2
2534 Female, age 94, left hemisphere 311.6
2256 Male, age 80, left hemisphere 233.3
2255 Female, age 91, right hemisphere 203.2
1883 Male, age 76, both hemispheres 182.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

721.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 721.8
Samples: 181

Max nTPM: 2389.9
Min nTPM: 381.1
Std nTPM: 272.5
Median nTPM: 673.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2389.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2126.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1640.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1601.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1558.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1451.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1365.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1318.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1196.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1146.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1108.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1051.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1040.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1025.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1020.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1013.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1005.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 996.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 985.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 980.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 968.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 966.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 963.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 962.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 956.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 936.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 891.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 878.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 870.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 868.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 853.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 848.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 843.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 834.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 833.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 829.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 828.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 826.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 823.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 823.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 823.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 816.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 803.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 801.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 800.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 784.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 783.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 781.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 778.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 777.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 771.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 770.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 769.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 766.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 763.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 760.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 752.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 752.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 751.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 750.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 748.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 748.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 739.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 736.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 732.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 726.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 724.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 720.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 717.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 712.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 708.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 704.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 702.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 702.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 694.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 692.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 692.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 691.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 688.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 687.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 687.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 686.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 686.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 684.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 680.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 679.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 678.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 678.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 677.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 675.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 673.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 672.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 670.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 666.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 666.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 662.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 660.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 657.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 654.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 651.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 649.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 649.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 648.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 645.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 644.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 639.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 636.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 634.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 629.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 629.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 629.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 627.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 617.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 615.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 611.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 608.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 605.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 595.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 595.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 593.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 589.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 585.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 584.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 584.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 583.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 582.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 576.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 574.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 572.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 571.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 568.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 568.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 566.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 558.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 558.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 557.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 555.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 552.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 551.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 542.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 539.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 536.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 536.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 535.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 535.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 534.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 533.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 531.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 530.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 524.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 524.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 519.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 511.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 504.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 500.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 498.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 492.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 492.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 489.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 489.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 488.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 481.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 480.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 479.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 475.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 474.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 472.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 471.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 465.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 463.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 456.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 454.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 449.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 447.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 443.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 440.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 434.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 415.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 408.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 398.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 381.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 17.3
FF:10151-102I7 76 years, female 17.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

294.4
Pig sample Sample description nTPM
Amygdala
nTPM: 294.4
Samples: 4

Max nTPM: 366.0
Min nTPM: 165.7
Sample A Female 336.6
Sample B Female 366.0
Sample C Male 309.2
Sample D Male 165.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

155.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 155.2
Samples: 4

Max nTPM: 170.7
Min nTPM: 141.8
Sample A Male 159.9
Sample B Male 148.3
Sample C Female 170.7
Sample D Female 141.8

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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