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RPL10A
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  • TISSUE

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  • RPL10A
BRAIN MIDBRAIN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Midbrain
Brain methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:631.9 nTPM
HPA Brain:260.5 nTPM
GTEx:631.9 nTPM
FANTOM5:11.8 Scaled Tags Per Million
Pig:447.7 nTPM
Mouse:138.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

260.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 237.0
2586 Male, age 75, left hemisphere 290.0
2411 Female, age 72, unknown 248.1
1870 Female, age 42, unknown 247.8
2666 Male, age 74, left hemisphere 245.8
1827 Male, age 72, unknown 237.7
2828 Female, age 72, unknown 237.6
2219 Male, age 76, both hemispheres 227.0
1830 Male, age 51, unknown 213.5
2019 Male, age 18, unknown 211.6
1833 Male, age 53, unknown 211.1
Dorsal raphe nucleus
nTPM: 239.2
2298 Female, age 72, unknown 284.2
2016 Female, age 72, unknown 245.7
2750 Male, age 76, both hemispheres 231.3
1828 Male, age 53, unknown 217.9
2047 Male, age 72, unknown 216.6
Inferior colliculus
nTPM: 235.1
2849 Male, age 72, unknown 246.6
2097 Female, age 72, unknown 239.0
1890 Male, age 53, unknown 237.2
1848 Female, age 42, unknown 217.4
Median raphe nucleus
nTPM: 217.9
2220 Male, age 76, midline 217.9
Periaquaductal grey, anterior
nTPM: 260.5
2502 Female, age 75, unknown 293.3
1947 Male, age 18, unknown 246.8
1795 Male, age 51, unknown 241.4
Periaquaductal grey, dorsal
nTPM: 232.4
1840 Male, age 53, unknown 283.0
2464 Female, age 72, unknown 232.1
1831 Male, age 72, unknown 220.0
2850 Male, age 76, both hemispheres 194.7
Periaquaductal grey, lateral
nTPM: 208.7
2053 Male, age 18, unknown 239.4
2272 Male, age 74, both hemispheres 199.5
2140 Male, age 76, both hemispheres 187.2
Pretectal area
nTPM: 218.7
2224 Female, age 72, unknown 244.4
2825 Male, age 18, unknown 242.9
2316 Male, age 76, right hemisphere 230.8
1815 Male, age 53, unknown 230.6
1816 Male, age 51, unknown 226.4
1817 Female, age 42, unknown 224.9
2007 Male, age 72, unknown 220.1
1944 Female, age 72, unknown 202.6
2667 Female, age 75, unknown 198.5
2407 Male, age 75, both hemispheres 193.4
2273 Male, age 74, both hemispheres 191.1
Red nucleus
nTPM: 239.7
2503 Female, age 72, unknown 311.0
1904 Male, age 53, unknown 263.5
2584 Male, age 75, left hemisphere 259.0
1821 Female, age 72, unknown 254.6
1865 Male, age 51, unknown 247.9
2725 Female, age 75, unknown 241.8
2227 Male, age 72, unknown 238.2
2769 Male, age 72, unknown 232.0
2588 Male, age 74, left hemisphere 224.2
1954 Female, age 42, unknown 211.0
2785 Male, age 18, unknown 205.8
2823 Male, age 76, right hemisphere 187.9
Substantia nigra
nTPM: 255.6
1851 Male, age 51, unknown 298.4
2665 Male, age 74, both hemispheres 296.5
2699 Male, age 18, unknown 279.1
2241 Male, age 72, unknown 264.4
2409 Female, age 72, unknown 254.9
2590 Female, age 75, unknown 250.5
1916 Female, age 42, unknown 244.7
2583 Male, age 75, right hemisphere 228.9
1889 Female, age 72, unknown 226.4
1941 Male, age 53, unknown 212.2
Superior colliculus
nTPM: 240.3
2587 Male, age 74, left hemisphere 273.6
1913 Female, age 42, unknown 260.3
1995 Male, age 72, unknown 253.7
1839 Male, age 51, unknown 241.8
1796 Male, age 53, unknown 239.5
2664 Male, age 75, both hemispheres 238.7
2668 Female, age 75, unknown 232.2
2261 Male, age 18, unknown 230.1
1895 Male, age 76, right hemisphere 224.6
2087 Female, age 72, unknown 208.9
Ventral tegmental area
nTPM: 255.0
1915 Female, age 42, unknown 286.8
2223 Female, age 72, unknown 271.4
2410 Female, age 72, unknown 262.3
2021 Male, age 53, unknown 255.3
1942 Male, age 51, unknown 235.2
2218 Male, age 76, both hemispheres 218.9

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

631.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 631.9
Samples: 183

Max nTPM: 1384.5
Min nTPM: 209.8
Std nTPM: 209.7
Median nTPM: 591.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1384.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1294.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1247.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1227.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1211.0
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1151.5
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1115.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1080.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1079.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1053.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1049.0
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 1006.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1004.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 993.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 982.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 967.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 966.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 960.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 949.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 917.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 909.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 890.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 879.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 870.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 849.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 844.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 813.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 812.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 812.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 808.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 802.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 796.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 793.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 782.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 772.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 771.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 766.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 763.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 763.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 760.4
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 748.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 742.8
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 741.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 735.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 726.7
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 725.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 723.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 717.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 714.4
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 712.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 711.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 710.7
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 703.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 700.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 700.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 694.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 690.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 687.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 682.8
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 680.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 678.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 671.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 671.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 666.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 665.3
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 659.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 649.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 649.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 645.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 645.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 641.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 637.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 635.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 630.8
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 626.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 624.9
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 616.0
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 613.0
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 612.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 608.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 607.9
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 607.5
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 605.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 602.5
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 600.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 598.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 593.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 593.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 592.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 591.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 591.2
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 591.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 590.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 590.5
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 590.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 588.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 588.0
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 587.6
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 586.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 585.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 582.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 580.9
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 580.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 579.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 578.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 571.5
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 569.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 566.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 566.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 565.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 564.1
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 561.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 560.0
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 558.4
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 554.3
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 552.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 550.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 533.5
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 532.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 530.5
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 527.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 527.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 525.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 524.1
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 518.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 514.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 514.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 513.5
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 510.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 501.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 499.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 498.3
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 497.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 497.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 496.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 494.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 491.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 490.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 489.7
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 478.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 471.5
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 470.9
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 465.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 464.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 463.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 462.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 461.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 461.4
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 461.3
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 455.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 452.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 442.9
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 442.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 439.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 439.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 437.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 432.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 431.8
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 427.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 424.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 423.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 420.9
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 416.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 410.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 402.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 397.6
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 397.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 397.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 394.3
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 394.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 392.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 387.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 380.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 374.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 372.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 367.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 354.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 323.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 322.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 306.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 283.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 264.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 209.8
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

11.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.8
FF:10158-103A5 76 years, female 11.8

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

447.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 416.6
Samples: 4

Max nTPM: 596.1
Min nTPM: 280.8
Sample A Female 596.1
Sample B Female 449.3
Sample C Male 340.3
Sample D Male 280.8
Midbrain
nTPM: 399.1
Samples: 4

Max nTPM: 550.2
Min nTPM: 270.8
Sample A Female 550.2
Sample B Female 437.8
Sample C Male 337.4
Sample D Male 270.8
Periaqueductal gray
nTPM: 292.3
Samples: 3

Max nTPM: 316.3
Min nTPM: 256.7
Sample B Female 316.3
Sample C Male 304.0
Sample D Male 256.7
Superior colliculi
nTPM: 447.7
Samples: 4

Max nTPM: 559.4
Min nTPM: 319.7
Sample A Female 534.1
Sample B Female 559.4
Sample C Male 377.5
Sample D Male 319.7

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 138.7
Samples: 4

Max nTPM: 179.9
Min nTPM: 114.7
Sample A Male 179.9
Sample B Male 120.7
Sample C Female 114.7
Sample D Female 139.6

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