MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70738.5 nTPM
HPA Brain:46129.4 nTPM
GTEx:70738.5 nTPM
Pig:7793.5 nTPM
Mouse:8156.1 nTPM
Allen mouse:7.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 46129.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31781.9
2586 Male, age 75, left hemisphere 48202.4
2219 Male, age 76, both hemispheres 43628.2
2666 Male, age 74, left hemisphere 38097.8
1833 Male, age 53, unknown 35731.5
2828 Female, age 72, unknown 34958.5
1830 Male, age 51, unknown 32819.6
1870 Female, age 42, unknown 30918.4
1827 Male, age 72, unknown 20082.3
2019 Male, age 18, unknown 17654.1
2411 Female, age 72, unknown 15726.3
Dorsal raphe nucleus
nTPM: 18132.1
1828 Male, age 53, unknown 27763.4
2750 Male, age 76, both hemispheres 19963.5
2047 Male, age 72, unknown 19197.7
2016 Female, age 72, unknown 16738.0
2298 Female, age 72, unknown 6997.9
Inferior colliculus
nTPM: 29194.8
2849 Male, age 72, unknown 60130.2
1848 Female, age 42, unknown 24088.0
1890 Male, age 53, unknown 23542.4
2097 Female, age 72, unknown 9018.7
Median raphe nucleus
nTPM: 46129.4
2220 Male, age 76, midline 46129.4
Periaquaductal grey, anterior
nTPM: 18356.7
2502 Female, age 75, unknown 24345.0
1947 Male, age 18, unknown 16208.5
1795 Male, age 51, unknown 14516.5
Periaquaductal grey, dorsal
nTPM: 26328.1
2850 Male, age 76, both hemispheres 45877.9
2464 Female, age 72, unknown 22699.6
1831 Male, age 72, unknown 19982.7
1840 Male, age 53, unknown 16752.0
Periaquaductal grey, lateral
nTPM: 16357.8
2140 Male, age 76, both hemispheres 20407.0
2053 Male, age 18, unknown 17699.4
2272 Male, age 74, both hemispheres 10966.9
Pretectal area
nTPM: 22281.6
2667 Female, age 75, unknown 30849.9
1817 Female, age 42, unknown 29845.3
2825 Male, age 18, unknown 29140.4
1944 Female, age 72, unknown 28687.9
1815 Male, age 53, unknown 28111.4
1816 Male, age 51, unknown 28075.5
2007 Male, age 72, unknown 22233.9
2407 Male, age 75, both hemispheres 18022.2
2224 Female, age 72, unknown 12944.5
2316 Male, age 76, right hemisphere 9157.1
2273 Male, age 74, both hemispheres 8029.8
Red nucleus
nTPM: 32262.5
2503 Female, age 72, unknown 43214.6
2588 Male, age 74, left hemisphere 42555.7
2823 Male, age 76, right hemisphere 41869.2
1954 Female, age 42, unknown 39263.0
1865 Male, age 51, unknown 33503.9
2584 Male, age 75, left hemisphere 30431.7
2227 Male, age 72, unknown 30143.2
2769 Male, age 72, unknown 28680.4
1904 Male, age 53, unknown 28426.4
2785 Male, age 18, unknown 26563.7
1821 Female, age 72, unknown 21496.3
2725 Female, age 75, unknown 21001.6
Substantia nigra
nTPM: 31358.2
2665 Male, age 74, both hemispheres 70906.0
2699 Male, age 18, unknown 54441.3
1916 Female, age 42, unknown 33997.2
1941 Male, age 53, unknown 28796.3
2241 Male, age 72, unknown 22700.6
2583 Male, age 75, right hemisphere 22156.2
1889 Female, age 72, unknown 21520.5
2409 Female, age 72, unknown 20662.4
1851 Male, age 51, unknown 19986.9
2590 Female, age 75, unknown 18414.2
Superior colliculus
nTPM: 22226.0
2664 Male, age 75, both hemispheres 39810.5
2587 Male, age 74, left hemisphere 25907.3
2668 Female, age 75, unknown 23559.5
1839 Male, age 51, unknown 22595.5
1913 Female, age 42, unknown 20818.9
2087 Female, age 72, unknown 20643.5
1895 Male, age 76, right hemisphere 20224.3
1995 Male, age 72, unknown 16805.0
1796 Male, age 53, unknown 16741.0
2261 Male, age 18, unknown 15154.6
Ventral tegmental area
nTPM: 27975.6
2218 Male, age 76, both hemispheres 44903.6
2223 Female, age 72, unknown 35850.1
1942 Male, age 51, unknown 26803.1
2410 Female, age 72, unknown 21374.4
1915 Female, age 42, unknown 19858.0
2021 Male, age 53, unknown 19064.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 70738.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70738.5
Samples: 183

Max nTPM: 259097.1
Min nTPM: 11389.8
Std nTPM: 42656.9
Median nTPM: 60102.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 259097.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 218561.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 214316.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 205928.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 195620.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 186252.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 178645.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 169936.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 161919.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 160996.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 160750.7
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MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7793.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6403.7
Samples: 4

Max nTPM: 9042.7
Min nTPM: 3655.2
Sample A Female 9042.7
Sample B Female 5334.1
Sample C Male 7582.8
Sample D Male 3655.2
Midbrain
nTPM: 7793.5
Samples: 4

Max nTPM: 11147.8
Min nTPM: 4536.2
Sample A Female 7705.0
Sample B Female 11147.8
Sample C Male 7785.0
Sample D Male 4536.2
Periaqueductal gray
nTPM: 6504.2
Samples: 3

Max nTPM: 7528.2
Min nTPM: 5378.3
Sample B Female 6606.0
Sample C Male 7528.2
Sample D Male 5378.3
Superior colliculi
nTPM: 5659.1
Samples: 4

Max nTPM: 8437.8
Min nTPM: 698.2
Sample A Female 8437.8
Sample B Female 698.2
Sample C Male 7353.9
Sample D Male 6146.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8156.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 8156.1
Samples: 4

Max nTPM: 8461.5
Min nTPM: 7789.6
Sample A Male 8461.5
Sample B Male 8003.9
Sample C Female 8369.4
Sample D Female 7789.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
75042238 Antisense, RP_051219_02_B02, Mouse strain C57BL/6J (56 days, male) 7.3
73949707 Antisense, RP_051219_02_B02, Mouse strain C57BL/6J (56 days, male) 5.5

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