MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10605.5 nTPM
HPA Brain:27975.2 nTPM
GTEx:10605.5 nTPM
Pig:9315.4 nTPM
Mouse:4169.0 nTPM
Allen mouse:21.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27975.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19619.1
2586 Male, age 75, left hemisphere 31097.5
2219 Male, age 76, both hemispheres 30931.9
2666 Male, age 74, left hemisphere 25561.8
2828 Female, age 72, unknown 22396.9
1833 Male, age 53, unknown 18790.3
1870 Female, age 42, unknown 17263.8
1830 Male, age 51, unknown 17238.8
1827 Male, age 72, unknown 13321.8
2019 Male, age 18, unknown 11367.8
2411 Female, age 72, unknown 8220.1
Dorsal raphe nucleus
nTPM: 11375.2
1828 Male, age 53, unknown 16734.6
2047 Male, age 72, unknown 13619.0
2750 Male, age 76, both hemispheres 12385.8
2016 Female, age 72, unknown 9510.5
2298 Female, age 72, unknown 4626.0
Inferior colliculus
nTPM: 16290.6
2849 Male, age 72, unknown 29417.7
1890 Male, age 53, unknown 16124.9
1848 Female, age 42, unknown 13339.3
2097 Female, age 72, unknown 6280.6
Median raphe nucleus
nTPM: 27975.2
2220 Male, age 76, midline 27975.2
Periaquaductal grey, anterior
nTPM: 11359.6
2502 Female, age 75, unknown 14095.5
1795 Male, age 51, unknown 10265.6
1947 Male, age 18, unknown 9717.7
Periaquaductal grey, dorsal
nTPM: 17139.3
2850 Male, age 76, both hemispheres 30331.9
1831 Male, age 72, unknown 14801.8
2464 Female, age 72, unknown 12250.5
1840 Male, age 53, unknown 11173.0
Periaquaductal grey, lateral
nTPM: 10245.4
2140 Male, age 76, both hemispheres 14195.0
2053 Male, age 18, unknown 10539.7
2272 Male, age 74, both hemispheres 6001.4
Pretectal area
nTPM: 15982.7
1816 Male, age 51, unknown 23370.5
1944 Female, age 72, unknown 22760.7
1817 Female, age 42, unknown 21674.1
2667 Female, age 75, unknown 21601.6
1815 Male, age 53, unknown 20742.7
2007 Male, age 72, unknown 16585.8
2825 Male, age 18, unknown 16402.8
2407 Male, age 75, both hemispheres 12248.4
2224 Female, age 72, unknown 8173.6
2316 Male, age 76, right hemisphere 6843.4
2273 Male, age 74, both hemispheres 5405.6
Red nucleus
nTPM: 17522.2
2584 Male, age 75, left hemisphere 24732.8
2588 Male, age 74, left hemisphere 21965.5
2823 Male, age 76, right hemisphere 20530.5
2503 Female, age 72, unknown 20342.9
1954 Female, age 42, unknown 18848.3
1865 Male, age 51, unknown 17930.9
2785 Male, age 18, unknown 17203.0
2227 Male, age 72, unknown 15157.1
1904 Male, age 53, unknown 14835.9
2769 Male, age 72, unknown 14651.3
2725 Female, age 75, unknown 12650.2
1821 Female, age 72, unknown 11418.4
Substantia nigra
nTPM: 19179.3
2665 Male, age 74, both hemispheres 36352.8
2699 Male, age 18, unknown 33485.1
1916 Female, age 42, unknown 22327.3
1941 Male, age 53, unknown 18848.4
2583 Male, age 75, right hemisphere 16467.9
1889 Female, age 72, unknown 15367.1
2590 Female, age 75, unknown 12767.6
2241 Male, age 72, unknown 12748.4
1851 Male, age 51, unknown 12171.0
2409 Female, age 72, unknown 11257.7
Superior colliculus
nTPM: 15286.1
2664 Male, age 75, both hemispheres 27670.8
2087 Female, age 72, unknown 18215.7
2587 Male, age 74, left hemisphere 16135.8
1913 Female, age 42, unknown 15276.3
2668 Female, age 75, unknown 14489.4
1839 Male, age 51, unknown 13723.8
1895 Male, age 76, right hemisphere 12860.0
1995 Male, age 72, unknown 12343.8
2261 Male, age 18, unknown 11327.7
1796 Male, age 53, unknown 10817.3
Ventral tegmental area
nTPM: 15274.4
2218 Male, age 76, both hemispheres 24690.6
2223 Female, age 72, unknown 17611.9
1942 Male, age 51, unknown 15207.0
1915 Female, age 42, unknown 12857.3
2021 Male, age 53, unknown 10981.2
2410 Female, age 72, unknown 10298.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10605.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10605.5
Samples: 183

Max nTPM: 47354.8
Min nTPM: 772.5
Std nTPM: 7808.6
Median nTPM: 8483.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 47354.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 39121.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 38727.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 37390.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 37156.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 30906.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 29531.8
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 28597.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 27859.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 26651.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 26484.9
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MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9315.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8195.3
Samples: 4

Max nTPM: 10255.5
Min nTPM: 5174.1
Sample A Female 10255.5
Sample B Female 7234.7
Sample C Male 10116.8
Sample D Male 5174.1
Midbrain
nTPM: 9315.4
Samples: 4

Max nTPM: 12699.0
Min nTPM: 6593.5
Sample A Female 8028.6
Sample B Female 12699.0
Sample C Male 9940.5
Sample D Male 6593.5
Periaqueductal gray
nTPM: 7011.3
Samples: 3

Max nTPM: 8021.0
Min nTPM: 5939.7
Sample B Female 7073.3
Sample C Male 8021.0
Sample D Male 5939.7
Superior colliculi
nTPM: 7411.9
Samples: 4

Max nTPM: 9470.6
Min nTPM: 2359.3
Sample A Female 8810.7
Sample B Female 2359.3
Sample C Male 9470.6
Sample D Male 9007.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4169.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 4169.1
Samples: 4

Max nTPM: 4304.2
Min nTPM: 3911.9
Sample A Male 4304.2
Sample B Male 4296.1
Sample C Female 4164.0
Sample D Female 3911.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 21.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.6
75080269 Antisense, RP_060412_06_H09, Mouse strain C57BL/6J (56 days, male) 22.5
73906215 Antisense, RP_051212_04_H07, Mouse strain C57BL/6J (56 days, male) 20.8

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