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  • SUMMARY

  • TISSUE

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  • SCAMP5
BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:101.5 nTPM
HPA Brain:199.4 nTPM
GTEx:101.5 nTPM
Pig:106.1 nTPM
Mouse:259.3 nTPM
Allen mouse:17.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

199.4
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 192.2
2226 Male, age 75, left hemisphere 225.7
1961 Female, age 42, unknown 158.7
Dorsomedial nucleus
nTPM: 175.1
1989 Male, age 62, unknown 226.5
2041 Female, age 72, unknown 154.7
2017 Female, age 42, unknown 143.9
Lateral hypothalamic area
nTPM: 199.4
2228 Male, age 66, unknown 245.1
1791 Male, age 80, right hemisphere 196.6
2271 Male, age 75, both hemispheres 191.3
2412 Male, age 62, unknown 164.4
Mammillary body
nTPM: 197.2
1923 Female, age 72, unknown 295.1
2413 Male, age 66, unknown 200.3
1834 Female, age 42, unknown 175.8
1948 Female, age 72, unknown 175.4
1945 Male, age 80, right hemisphere 139.2
Paraventricular nucleus
nTPM: 144.6
2700 Male, age 62, unknown 144.6
Preoptic area
nTPM: 158.7
1907 Male, age 80, right hemisphere 206.4
1861 Female, age 42, unknown 151.0
2414 Female, age 72, unknown 118.6
Supraoptic nucleus
nTPM: 117.6
2835 Female, age 72, unknown 157.2
1894 Female, age 72, unknown 103.2
2043 Male, age 62, unknown 92.4
Ventromedial nucleus
nTPM: 171.2
1982 Female, age 72, unknown 184.2
1822 Female, age 42, unknown 158.1

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.5
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 101.5
Samples: 257

Max nTPM: 245.1
Min nTPM: 34.1
Std nTPM: 35.0
Median nTPM: 99.1
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 245.1
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 217.8
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 204.1
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 198.5
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 195.9
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 187.9
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 179.2
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 171.9
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 169.7
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 163.7
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 161.1
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 155.7
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 155.2
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 154.2
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 152.0
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 150.0
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 148.5
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 148.3
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 147.0
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 146.8
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 146.5
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 146.2
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 146.2
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 145.6
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 145.0
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 144.4
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 144.3
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 144.1
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 143.8
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 143.1
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 141.6
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 140.8
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 139.4
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 138.9
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 138.3
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 138.1
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 138.1
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 137.9
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 137.5
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 136.8
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 136.4
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 136.1
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 135.9
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 135.9
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 134.8
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 134.0
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 133.5
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 131.9
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 131.3
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 129.9
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 129.2
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 128.8
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 128.5
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 128.5
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 127.9
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 127.7
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 126.1
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 125.5
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 125.3
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 124.5
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 124.1
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 123.8
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 123.6
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 123.2
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 123.0
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 122.9
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 122.7
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 122.3
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 122.1
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 122.0
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 122.0
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 122.0
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 121.4
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 120.8
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 119.9
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 119.9
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 119.6
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 118.4
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 118.4
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 118.3
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 118.1
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 118.0
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 117.8
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 117.1
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 115.9
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 115.4
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 115.3
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 114.8
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 114.8
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 114.2
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 112.8
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 112.3
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 112.3
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 111.0
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 110.8
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 110.0
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 109.9
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 109.6
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 109.6
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 109.4
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 109.4
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 109.3
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 109.0
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 108.7
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 108.6
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 107.3
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 107.0
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 106.4
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 106.3
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 106.2
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 105.9
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 105.9
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 105.7
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 105.5
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 105.5
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 104.4
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 103.6
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 103.2
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 103.1
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 101.7
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 101.6
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 100.9
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 100.1
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 100.1
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 99.7
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 99.6
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 99.5
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 99.4
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 99.1
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 99.0
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 98.3
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 97.9
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 97.6
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 97.6
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 97.2
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 97.1
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 97.0
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 97.0
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 96.8
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 96.5
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 96.5
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 96.4
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 96.3
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 96.2
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 96.1
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 96.1
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 95.7
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 95.7
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 95.4
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 95.3
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 94.0
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 93.3
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 92.2
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 92.0
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 91.9
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 91.6
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 91.2
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 90.7
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 90.5
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 90.0
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 89.9
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 89.3
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 88.4
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 88.0
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 87.7
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 87.2
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 87.2
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 86.6
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 86.5
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 86.2
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 85.9
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 85.7
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 85.7
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 85.5
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 84.8
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 83.6
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 83.6
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 82.3
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 82.1
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 81.6
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 81.4
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 80.8
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 79.6
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 79.3
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 79.2
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 79.0
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 77.7
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 77.2
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 77.1
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 77.0
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 76.9
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 76.8
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 76.8
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 76.3
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 76.2
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 75.9
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 75.6
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 75.1
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 75.0
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 74.7
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 74.5
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 74.2
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 74.1
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 73.2
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 72.2
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 72.1
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 70.8
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 70.2
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 70.1
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 70.1
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 70.1
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 69.6
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 69.6
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 67.2
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 66.4
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 65.8
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 65.6
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 65.0
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 64.2
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 63.9
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 63.2
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 62.6
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 62.6
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 62.1
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 61.2
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 61.0
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 60.3
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 60.1
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 59.1
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 58.7
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 58.3
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 56.6
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 56.4
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 56.1
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 53.5
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 53.4
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 53.0
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 51.9
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 50.6
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 50.0
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 46.9
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 46.9
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 46.7
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 46.0
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 45.8
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 44.9
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 44.2
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 44.0
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 43.6
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 41.6
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 41.2
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 39.5
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 38.1
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 36.4
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 35.8
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 34.3
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 34.1
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.1
Pig sample Sample description nTPM
Hypothalamus
nTPM: 106.1
Samples: 4

Max nTPM: 138.1
Min nTPM: 77.4
Sample A Female 138.1
Sample B Female 108.4
Sample C Male 100.6
Sample D Male 77.4

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

259.3
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 259.3
Samples: 4

Max nTPM: 269.6
Min nTPM: 245.3
Sample A Male 260.1
Sample B Male 269.6
Sample C Female 262.3
Sample D Female 245.3

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.9
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 17.9
583561 Antisense, RP_040831_02_H11, Mouse strain C57BL/6J (56 days, male) 20.1
81599672 Antisense, RP_071219_04_G12, Mouse strain C57BL/6J (56 days, male) 15.7

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