MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:75.1 nTPM
HPA Brain:187.2 nTPM
GTEx:75.1 nTPM
FANTOM5:38.5 Scaled Tags Per Million
Pig:117.9 nTPM
Mouse:232.5 nTPM
Allen mouse:17.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 187.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 170.2
2666 Male, age 74, left hemisphere 238.1
2586 Male, age 75, left hemisphere 207.0
1827 Male, age 72, unknown 200.6
2019 Male, age 18, unknown 171.2
2219 Male, age 76, both hemispheres 168.8
2828 Female, age 72, unknown 165.0
2411 Female, age 72, unknown 155.7
1870 Female, age 42, unknown 137.1
1833 Male, age 53, unknown 133.7
1830 Male, age 51, unknown 124.2
Dorsal raphe nucleus
nTPM: 144.3
1828 Male, age 53, unknown 159.1
2047 Male, age 72, unknown 154.7
2298 Female, age 72, unknown 154.7
2750 Male, age 76, both hemispheres 142.5
2016 Female, age 72, unknown 110.4
Inferior colliculus
nTPM: 164.2
2097 Female, age 72, unknown 190.7
1848 Female, age 42, unknown 161.7
1890 Male, age 53, unknown 158.4
2849 Male, age 72, unknown 145.8
Median raphe nucleus
nTPM: 166.3
2220 Male, age 76, midline 166.3
Periaquaductal grey, anterior
nTPM: 187.2
1947 Male, age 18, unknown 196.7
1795 Male, age 51, unknown 190.5
2502 Female, age 75, unknown 174.2
Periaquaductal grey, dorsal
nTPM: 135.5
1840 Male, age 53, unknown 143.6
1831 Male, age 72, unknown 141.7
2464 Female, age 72, unknown 137.2
2850 Male, age 76, both hemispheres 119.5
Periaquaductal grey, lateral
nTPM: 116.6
2053 Male, age 18, unknown 139.3
2140 Male, age 76, both hemispheres 118.1
2272 Male, age 74, both hemispheres 92.3
Pretectal area
nTPM: 178.8
1816 Male, age 51, unknown 270.5
2007 Male, age 72, unknown 240.5
1817 Female, age 42, unknown 226.7
1944 Female, age 72, unknown 224.5
1815 Male, age 53, unknown 194.8
2667 Female, age 75, unknown 169.2
2825 Male, age 18, unknown 142.7
2407 Male, age 75, both hemispheres 137.5
2224 Female, age 72, unknown 136.3
2316 Male, age 76, right hemisphere 132.3
2273 Male, age 74, both hemispheres 92.2
Red nucleus
nTPM: 143.4
2584 Male, age 75, left hemisphere 169.9
1821 Female, age 72, unknown 165.9
2785 Male, age 18, unknown 160.9
2823 Male, age 76, right hemisphere 149.7
1954 Female, age 42, unknown 147.2
2588 Male, age 74, left hemisphere 144.6
2769 Male, age 72, unknown 138.8
2227 Male, age 72, unknown 135.2
1865 Male, age 51, unknown 131.1
2503 Female, age 72, unknown 129.3
1904 Male, age 53, unknown 126.1
2725 Female, age 75, unknown 121.7
Substantia nigra
nTPM: 178.0
1941 Male, age 53, unknown 229.3
2665 Male, age 74, both hemispheres 224.5
1916 Female, age 42, unknown 223.1
1889 Female, age 72, unknown 207.6
1851 Male, age 51, unknown 180.0
2241 Male, age 72, unknown 164.9
2583 Male, age 75, right hemisphere 161.2
2409 Female, age 72, unknown 143.6
2699 Male, age 18, unknown 123.2
2590 Female, age 75, unknown 122.2
Superior colliculus
nTPM: 177.0
2668 Female, age 75, unknown 304.8
2087 Female, age 72, unknown 207.8
2664 Male, age 75, both hemispheres 195.3
2261 Male, age 18, unknown 193.3
1796 Male, age 53, unknown 183.7
1895 Male, age 76, right hemisphere 177.7
1839 Male, age 51, unknown 151.5
1913 Female, age 42, unknown 123.1
2587 Male, age 74, left hemisphere 120.1
1995 Male, age 72, unknown 112.7
Ventral tegmental area
nTPM: 158.4
2410 Female, age 72, unknown 197.8
2218 Male, age 76, both hemispheres 186.2
1915 Female, age 42, unknown 169.8
1942 Male, age 51, unknown 151.6
2223 Female, age 72, unknown 127.8
2021 Male, age 53, unknown 117.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 75.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.1
Samples: 183

Max nTPM: 319.2
Min nTPM: 13.8
Std nTPM: 45.5
Median nTPM: 61.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 319.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 236.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 224.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 190.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 174.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 174.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 173.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 172.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 171.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 167.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 162.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.5
FF:10158-103A5 76 years, female 38.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 117.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 118.0
Samples: 4

Max nTPM: 167.1
Min nTPM: 62.4
Sample A Female 167.1
Sample B Female 81.4
Sample C Male 160.9
Sample D Male 62.4
Midbrain
nTPM: 117.3
Samples: 4

Max nTPM: 174.9
Min nTPM: 87.0
Sample A Female 87.0
Sample B Female 87.7
Sample C Male 174.9
Sample D Male 119.7
Periaqueductal gray
nTPM: 80.5
Samples: 3

Max nTPM: 96.0
Min nTPM: 66.6
Sample B Female 79.0
Sample C Male 96.0
Sample D Male 66.6
Superior colliculi
nTPM: 117.4
Samples: 4

Max nTPM: 150.0
Min nTPM: 65.8
Sample A Female 132.8
Sample B Female 65.8
Sample C Male 150.0
Sample D Male 120.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 232.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 232.5
Samples: 4

Max nTPM: 242.2
Min nTPM: 220.5
Sample A Male 220.5
Sample B Male 225.4
Sample C Female 242.2
Sample D Female 241.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.3
583561 Antisense, RP_040831_02_H11, Mouse strain C57BL/6J (56 days, male) 19.7
81599672 Antisense, RP_071219_04_G12, Mouse strain C57BL/6J (56 days, male) 15.0

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