MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.3 nTPM
HPA Brain:70.0 nTPM
GTEx:19.3 nTPM
FANTOM5:118.6 Scaled Tags Per Million
Pig:31.5 nTPM
Mouse:27.3 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 70.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.2
2411 Female, age 72, unknown 73.1
1830 Male, age 51, unknown 72.8
1833 Male, age 53, unknown 70.9
1870 Female, age 42, unknown 69.6
2219 Male, age 76, both hemispheres 58.3
2019 Male, age 18, unknown 57.7
2828 Female, age 72, unknown 53.1
1827 Male, age 72, unknown 50.5
2666 Male, age 74, left hemisphere 47.9
2586 Male, age 75, left hemisphere 38.6
Dorsal raphe nucleus
nTPM: 41.3
2750 Male, age 76, both hemispheres 72.3
2016 Female, age 72, unknown 45.0
1828 Male, age 53, unknown 37.0
2298 Female, age 72, unknown 27.9
2047 Male, age 72, unknown 24.2
Inferior colliculus
nTPM: 53.1
2097 Female, age 72, unknown 64.6
1848 Female, age 42, unknown 49.6
1890 Male, age 53, unknown 49.4
2849 Male, age 72, unknown 48.9
Median raphe nucleus
nTPM: 32.3
2220 Male, age 76, midline 32.3
Periaquaductal grey, anterior
nTPM: 50.4
1947 Male, age 18, unknown 74.0
2502 Female, age 75, unknown 43.5
1795 Male, age 51, unknown 33.8
Periaquaductal grey, dorsal
nTPM: 33.1
2464 Female, age 72, unknown 49.2
1831 Male, age 72, unknown 38.6
1840 Male, age 53, unknown 24.5
2850 Male, age 76, both hemispheres 20.0
Periaquaductal grey, lateral
nTPM: 33.8
2272 Male, age 74, both hemispheres 39.8
2053 Male, age 18, unknown 35.3
2140 Male, age 76, both hemispheres 26.4
Pretectal area
nTPM: 43.4
1815 Male, age 53, unknown 61.7
2316 Male, age 76, right hemisphere 57.5
2007 Male, age 72, unknown 49.2
2407 Male, age 75, both hemispheres 48.1
1817 Female, age 42, unknown 43.7
2825 Male, age 18, unknown 41.4
1816 Male, age 51, unknown 39.5
1944 Female, age 72, unknown 37.2
2667 Female, age 75, unknown 35.5
2273 Male, age 74, both hemispheres 31.9
2224 Female, age 72, unknown 31.3
Red nucleus
nTPM: 70.0
1904 Male, age 53, unknown 87.2
1865 Male, age 51, unknown 81.6
2503 Female, age 72, unknown 78.0
1821 Female, age 72, unknown 77.2
1954 Female, age 42, unknown 72.5
2769 Male, age 72, unknown 72.2
2227 Male, age 72, unknown 71.4
2785 Male, age 18, unknown 67.7
2823 Male, age 76, right hemisphere 67.5
2588 Male, age 74, left hemisphere 63.9
2725 Female, age 75, unknown 55.6
2584 Male, age 75, left hemisphere 45.4
Substantia nigra
nTPM: 44.9
2409 Female, age 72, unknown 65.1
2590 Female, age 75, unknown 59.7
2583 Male, age 75, right hemisphere 52.0
1851 Male, age 51, unknown 50.7
1889 Female, age 72, unknown 49.0
2241 Male, age 72, unknown 42.0
1916 Female, age 42, unknown 34.2
2699 Male, age 18, unknown 33.8
1941 Male, age 53, unknown 32.9
2665 Male, age 74, both hemispheres 29.9
Superior colliculus
nTPM: 55.1
1895 Male, age 76, right hemisphere 80.2
1913 Female, age 42, unknown 74.6
1995 Male, age 72, unknown 68.8
2668 Female, age 75, unknown 62.7
2587 Male, age 74, left hemisphere 50.4
1839 Male, age 51, unknown 49.5
1796 Male, age 53, unknown 49.3
2087 Female, age 72, unknown 45.7
2261 Male, age 18, unknown 43.4
2664 Male, age 75, both hemispheres 26.7
Ventral tegmental area
nTPM: 45.3
2410 Female, age 72, unknown 63.8
2223 Female, age 72, unknown 49.0
1915 Female, age 42, unknown 43.7
1942 Male, age 51, unknown 41.6
2021 Male, age 53, unknown 39.2
2218 Male, age 76, both hemispheres 34.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.3
Samples: 183

Max nTPM: 61.0
Min nTPM: 3.5
Std nTPM: 10.3
Median nTPM: 16.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 61.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 60.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 54.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 50.5
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 47.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 47.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 46.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 45.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 45.1
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 43.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 37.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 118.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.6
FF:10158-103A5 76 years, female 118.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.8
Samples: 4

Max nTPM: 33.6
Min nTPM: 17.4
Sample A Female 17.4
Sample B Female 18.0
Sample C Male 18.0
Sample D Male 33.6
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 35.3
Min nTPM: 22.4
Sample A Female 22.4
Sample B Female 27.2
Sample C Male 33.5
Sample D Male 35.3
Periaqueductal gray
nTPM: 19.4
Samples: 3

Max nTPM: 23.4
Min nTPM: 16.7
Sample B Female 23.4
Sample C Male 16.7
Sample D Male 18.1
Superior colliculi
nTPM: 31.5
Samples: 4

Max nTPM: 38.1
Min nTPM: 23.0
Sample A Female 35.8
Sample B Female 23.0
Sample C Male 29.1
Sample D Male 38.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 27.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.3
Samples: 4

Max nTPM: 28.6
Min nTPM: 25.9
Sample A Male 25.9
Sample B Male 26.1
Sample C Female 28.6
Sample D Female 28.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
81671346 Antisense, RP_081002_02_D05, Mouse strain C57BL/6J (56 days, male) 3.0
539 Antisense, RP_Baylor_103328, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo