MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.7 nTPM
HPA Brain:114.1 nTPM
GTEx:56.7 nTPM
FANTOM5:35.0 Scaled Tags Per Million
Pig:245.5 nTPM
Mouse:118.8 nTPM
Allen mouse:5.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 114.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.5
2411 Female, age 72, unknown 119.7
1827 Male, age 72, unknown 111.3
2666 Male, age 74, left hemisphere 102.6
1870 Female, age 42, unknown 99.1
2219 Male, age 76, both hemispheres 82.3
1833 Male, age 53, unknown 75.6
1830 Male, age 51, unknown 75.2
2019 Male, age 18, unknown 69.2
2586 Male, age 75, left hemisphere 60.1
2828 Female, age 72, unknown 59.9
Dorsal raphe nucleus
nTPM: 95.2
2298 Female, age 72, unknown 130.0
2047 Male, age 72, unknown 106.7
2750 Male, age 76, both hemispheres 94.2
1828 Male, age 53, unknown 81.4
2016 Female, age 72, unknown 63.8
Inferior colliculus
nTPM: 99.7
1848 Female, age 42, unknown 114.0
2097 Female, age 72, unknown 110.0
2849 Male, age 72, unknown 104.5
1890 Male, age 53, unknown 70.6
Median raphe nucleus
nTPM: 114.1
2220 Male, age 76, midline 114.1
Periaquaductal grey, anterior
nTPM: 114.1
1947 Male, age 18, unknown 158.2
1795 Male, age 51, unknown 97.9
2502 Female, age 75, unknown 86.4
Periaquaductal grey, dorsal
nTPM: 85.1
1840 Male, age 53, unknown 109.9
2464 Female, age 72, unknown 85.4
2850 Male, age 76, both hemispheres 80.8
1831 Male, age 72, unknown 64.5
Periaquaductal grey, lateral
nTPM: 69.1
2140 Male, age 76, both hemispheres 78.5
2053 Male, age 18, unknown 75.9
2272 Male, age 74, both hemispheres 52.9
Pretectal area
nTPM: 92.9
2224 Female, age 72, unknown 123.3
2007 Male, age 72, unknown 121.2
1816 Male, age 51, unknown 118.8
1944 Female, age 72, unknown 109.4
1817 Female, age 42, unknown 106.3
1815 Male, age 53, unknown 89.6
2825 Male, age 18, unknown 85.8
2316 Male, age 76, right hemisphere 78.9
2667 Female, age 75, unknown 68.3
2407 Male, age 75, both hemispheres 62.2
2273 Male, age 74, both hemispheres 58.2
Red nucleus
nTPM: 62.7
2725 Female, age 75, unknown 85.2
1821 Female, age 72, unknown 79.4
2584 Male, age 75, left hemisphere 76.2
2588 Male, age 74, left hemisphere 75.6
2785 Male, age 18, unknown 66.3
1954 Female, age 42, unknown 61.7
2769 Male, age 72, unknown 57.6
2227 Male, age 72, unknown 56.7
1865 Male, age 51, unknown 49.5
2823 Male, age 76, right hemisphere 49.5
2503 Female, age 72, unknown 48.8
1904 Male, age 53, unknown 46.3
Substantia nigra
nTPM: 76.6
1941 Male, age 53, unknown 117.5
1889 Female, age 72, unknown 106.6
2241 Male, age 72, unknown 91.4
2409 Female, age 72, unknown 74.6
2590 Female, age 75, unknown 71.8
2665 Male, age 74, both hemispheres 69.2
1916 Female, age 42, unknown 67.7
1851 Male, age 51, unknown 63.3
2583 Male, age 75, right hemisphere 59.1
2699 Male, age 18, unknown 44.7
Superior colliculus
nTPM: 78.3
1895 Male, age 76, right hemisphere 113.8
1839 Male, age 51, unknown 100.2
2668 Female, age 75, unknown 93.3
2261 Male, age 18, unknown 89.8
1796 Male, age 53, unknown 87.0
2087 Female, age 72, unknown 82.6
2587 Male, age 74, left hemisphere 68.7
2664 Male, age 75, both hemispheres 54.1
1913 Female, age 42, unknown 52.6
1995 Male, age 72, unknown 40.6
Ventral tegmental area
nTPM: 75.4
2218 Male, age 76, both hemispheres 82.5
2410 Female, age 72, unknown 81.2
1915 Female, age 42, unknown 77.9
1942 Male, age 51, unknown 76.4
2021 Male, age 53, unknown 71.3
2223 Female, age 72, unknown 62.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 56.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.7
Samples: 183

Max nTPM: 374.8
Min nTPM: 10.7
Std nTPM: 43.5
Median nTPM: 44.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 374.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 262.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 188.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 155.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 144.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 137.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 132.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 129.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 125.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 124.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 121.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 35.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.0
FF:10158-103A5 76 years, female 35.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 245.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 134.8
Samples: 4

Max nTPM: 219.5
Min nTPM: 70.1
Sample A Female 219.5
Sample B Female 104.9
Sample C Male 144.7
Sample D Male 70.1
Midbrain
nTPM: 222.8
Samples: 4

Max nTPM: 309.7
Min nTPM: 111.0
Sample A Female 111.0
Sample B Female 172.6
Sample C Male 297.8
Sample D Male 309.7
Periaqueductal gray
nTPM: 170.1
Samples: 3

Max nTPM: 187.4
Min nTPM: 154.8
Sample B Female 168.0
Sample C Male 187.4
Sample D Male 154.8
Superior colliculi
nTPM: 245.5
Samples: 4

Max nTPM: 327.3
Min nTPM: 109.8
Sample A Female 299.9
Sample B Female 109.8
Sample C Male 327.3
Sample D Male 244.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 118.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 118.8
Samples: 4

Max nTPM: 128.3
Min nTPM: 107.0
Sample A Male 107.0
Sample B Male 128.3
Sample C Female 121.2
Sample D Female 118.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
69133785 Antisense, RP_050321_02_C08, Mouse strain C57BL/6J (56 days, male) 5.0

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