We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MT-ND3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • MT-ND3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:70176.1 nTPM
HPA Brain:31376.2 nTPM
GTEx:70176.1 nTPM
Pig:32518.5 nTPM
Mouse:6598.0 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31376.2
Sample id Sample description nTPM
Amygdala
nTPM: 29087.8
2695 Female, age 67, right hemisphere 69766.4
2814 Male, age 76, right hemisphere 26563.3
2514 Male, age 75, right hemisphere 22999.1
2517 Female, age 94, left hemisphere 19433.6
1987 Female, age 91, left hemisphere 6676.5
Basal amygdala
nTPM: 31376.2
2827 Female, age 67, right hemisphere 58601.8
2609 Male, age 75, right hemisphere 35217.4
1955 Male, age 76, both hemispheres 32619.3
2243 Female, age 91, right hemisphere 27153.0
2685 Female, age 94, left hemisphere 23328.5
2110 Male, age 80, left hemisphere 11337.2
Central amygdala
nTPM: 29736.4
2826 Female, age 94, left hemisphere 43010.1
2701 Female, age 91, right hemisphere 34078.0
2239 Male, age 80, left hemisphere 26478.2
1905 Male, age 76, both hemispheres 24264.6
2515 Male, age 75, right hemisphere 20851.2
Corticomedial amygdala
nTPM: 28543.3
2240 Male, age 76, both hemispheres 51627.0
2535 Female, age 67, right hemisphere 48487.0
2242 Female, age 91, right hemisphere 24399.7
2428 Male, age 75, right hemisphere 18687.5
2829 Male, age 80, left hemisphere 15850.2
2429 Female, age 94, left hemisphere 12208.5
Lateral amygdala
nTPM: 27371.2
2830 Female, age 67, right hemisphere 51228.2
2534 Female, age 94, left hemisphere 28366.0
2516 Male, age 75, right hemisphere 24112.9
2256 Male, age 80, left hemisphere 21472.3
1883 Male, age 76, both hemispheres 20622.7
2255 Female, age 91, right hemisphere 18425.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70176.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 70176.1
Samples: 181

Max nTPM: 295538.1
Min nTPM: 8784.4
Std nTPM: 44882.6
Median nTPM: 58464.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 295538.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 217839.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 205459.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 196910.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 195521.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 188950.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 185418.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 174629.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 170263.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 155400.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 155394.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 152635.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 151707.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 151264.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 148612.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 134447.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 133202.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 130032.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 129432.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 128685.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 122111.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 115515.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 114795.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 113230.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 112562.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 110838.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 110778.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 109080.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 107965.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 107826.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 102685.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 100564.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 100347.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 99096.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 99076.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 96142.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 95759.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 94983.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 93406.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 91203.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 90983.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 90009.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 89693.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 89325.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 88807.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 88615.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 87618.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 87198.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 86748.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 85788.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 82267.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 80841.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 80513.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 79709.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 79038.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 76562.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 76357.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 75975.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 75217.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 74485.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 74150.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 74127.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 73831.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 73768.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 72087.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 70441.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 69907.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 69735.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 69526.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 69044.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 68699.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 68085.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 67505.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 67399.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 66649.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 66561.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 66442.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 65062.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 65053.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 64625.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 64440.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 64367.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 63755.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 63298.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 62639.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 62414.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 62349.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 61472.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 59805.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 58714.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 58464.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 57721.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 57301.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 56907.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 56389.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 55561.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 55268.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 54745.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 54339.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 54325.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 54304.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 54285.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 54185.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 54151.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 53196.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 52598.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 52066.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 51116.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 50957.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 49439.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 49282.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 48514.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 48427.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 48115.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 48071.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 47682.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 47646.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 47372.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 46148.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 45585.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 45178.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 44830.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 44500.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 43733.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 43729.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 43682.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 43447.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 43403.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 42733.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 42644.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 42331.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 42237.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 41873.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 41048.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 40699.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 40313.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 40248.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 40075.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 39946.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 39933.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 39685.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 38405.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 38239.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 38186.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 37843.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 35041.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 34717.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 34357.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 34273.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 34028.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 34013.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 33522.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 32968.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 32904.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 32411.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 32143.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 32055.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 31622.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 31365.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 30494.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 30476.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 27628.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 27550.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 27458.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 26374.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 24522.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 23216.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 23125.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 22292.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 21763.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 21518.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 20437.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 19831.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 18355.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 18051.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 16814.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 16385.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 13319.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 12104.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 11782.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 8784.4
Show allShow less

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32518.5
Pig sample Sample description nTPM
Amygdala
nTPM: 32518.5
Samples: 4

Max nTPM: 40577.2
Min nTPM: 13857.8
Sample A Female 40577.2
Sample B Female 39026.2
Sample C Male 36612.6
Sample D Male 13857.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6598.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 6598.0
Samples: 4

Max nTPM: 7826.3
Min nTPM: 4806.0
Sample A Male 4806.0
Sample B Male 6251.4
Sample C Female 7826.3
Sample D Female 7508.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
73949734 Antisense, RP_051219_02_B05, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo