MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58345.9 nTPM
HPA Brain:41364.5 nTPM
GTEx:58345.9 nTPM
Pig:22979.7 nTPM
Mouse:5516.8 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41364.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27436.3
2586 Male, age 75, left hemisphere 45480.5
2666 Male, age 74, left hemisphere 41223.5
2219 Male, age 76, both hemispheres 40681.9
2828 Female, age 72, unknown 29746.8
1870 Female, age 42, unknown 28348.8
1833 Male, age 53, unknown 25516.4
1830 Male, age 51, unknown 23040.0
1827 Male, age 72, unknown 15948.1
2019 Male, age 18, unknown 13236.9
2411 Female, age 72, unknown 11140.2
Dorsal raphe nucleus
nTPM: 14377.4
1828 Male, age 53, unknown 21016.2
2047 Male, age 72, unknown 17062.6
2750 Male, age 76, both hemispheres 14984.7
2016 Female, age 72, unknown 13532.1
2298 Female, age 72, unknown 5291.4
Inferior colliculus
nTPM: 25177.4
2849 Male, age 72, unknown 51267.0
1890 Male, age 53, unknown 23134.2
1848 Female, age 42, unknown 19101.8
2097 Female, age 72, unknown 7206.8
Median raphe nucleus
nTPM: 41364.5
2220 Male, age 76, midline 41364.5
Periaquaductal grey, anterior
nTPM: 14220.0
2502 Female, age 75, unknown 17519.7
1795 Male, age 51, unknown 13604.3
1947 Male, age 18, unknown 11536.0
Periaquaductal grey, dorsal
nTPM: 24747.3
2850 Male, age 76, both hemispheres 48199.9
1831 Male, age 72, unknown 18858.7
1840 Male, age 53, unknown 16033.7
2464 Female, age 72, unknown 15896.7
Periaquaductal grey, lateral
nTPM: 12856.7
2140 Male, age 76, both hemispheres 16602.5
2053 Male, age 18, unknown 15194.0
2272 Male, age 74, both hemispheres 6773.4
Pretectal area
nTPM: 21574.1
1944 Female, age 72, unknown 33777.0
2667 Female, age 75, unknown 31857.9
1816 Male, age 51, unknown 28963.0
1817 Female, age 42, unknown 28442.8
1815 Male, age 53, unknown 24452.1
2825 Male, age 18, unknown 24343.2
2007 Male, age 72, unknown 22427.7
2407 Male, age 75, both hemispheres 17638.7
2224 Female, age 72, unknown 10984.5
2316 Male, age 76, right hemisphere 7953.6
2273 Male, age 74, both hemispheres 6474.5
Red nucleus
nTPM: 25611.0
2503 Female, age 72, unknown 33790.4
2588 Male, age 74, left hemisphere 32271.6
2584 Male, age 75, left hemisphere 31150.4
1865 Male, age 51, unknown 30778.7
1954 Female, age 42, unknown 29419.2
2823 Male, age 76, right hemisphere 28838.5
2785 Male, age 18, unknown 24512.5
1904 Male, age 53, unknown 21748.2
2227 Male, age 72, unknown 20562.1
2769 Male, age 72, unknown 20009.4
2725 Female, age 75, unknown 19660.5
1821 Female, age 72, unknown 14590.9
Substantia nigra
nTPM: 25732.2
2699 Male, age 18, unknown 50375.0
2665 Male, age 74, both hemispheres 46146.5
1916 Female, age 42, unknown 32553.9
1941 Male, age 53, unknown 23992.0
1889 Female, age 72, unknown 22500.4
2241 Male, age 72, unknown 20774.2
2583 Male, age 75, right hemisphere 20046.9
1851 Male, age 51, unknown 14534.7
2590 Female, age 75, unknown 13379.9
2409 Female, age 72, unknown 13018.8
Superior colliculus
nTPM: 20985.7
2664 Male, age 75, both hemispheres 42351.9
2587 Male, age 74, left hemisphere 26529.6
1913 Female, age 42, unknown 20890.3
2087 Female, age 72, unknown 20754.2
2668 Female, age 75, unknown 20648.3
1895 Male, age 76, right hemisphere 18613.6
1839 Male, age 51, unknown 17150.1
1995 Male, age 72, unknown 15293.5
1796 Male, age 53, unknown 14724.7
2261 Male, age 18, unknown 12901.3
Ventral tegmental area
nTPM: 21106.1
2218 Male, age 76, both hemispheres 34868.3
2223 Female, age 72, unknown 25693.0
1942 Male, age 51, unknown 21274.2
1915 Female, age 42, unknown 18166.0
2021 Male, age 53, unknown 16343.6
2410 Female, age 72, unknown 10291.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58345.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58345.9
Samples: 183

Max nTPM: 182949.2
Min nTPM: 3558.5
Std nTPM: 37557.4
Median nTPM: 45944.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 182949.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 182901.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 178886.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 171105.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 169339.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 167594.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 158007.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 157875.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 151440.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 148177.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 145269.9
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MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22979.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16880.8
Samples: 4

Max nTPM: 21388.3
Min nTPM: 10086.5
Sample A Female 20176.2
Sample B Female 15872.3
Sample C Male 21388.3
Sample D Male 10086.5
Midbrain
nTPM: 22979.7
Samples: 4

Max nTPM: 35197.8
Min nTPM: 13714.0
Sample A Female 18982.1
Sample B Female 35197.8
Sample C Male 24024.9
Sample D Male 13714.0
Periaqueductal gray
nTPM: 18012.6
Samples: 3

Max nTPM: 20090.3
Min nTPM: 14208.4
Sample B Female 19739.1
Sample C Male 20090.3
Sample D Male 14208.4
Superior colliculi
nTPM: 17860.9
Samples: 4

Max nTPM: 24985.2
Min nTPM: 2970.7
Sample A Female 22025.6
Sample B Female 2970.7
Sample C Male 24985.2
Sample D Male 21462.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5516.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 5516.8
Samples: 4

Max nTPM: 6535.5
Min nTPM: 4673.5
Sample A Male 4917.4
Sample B Male 4673.5
Sample C Female 5940.8
Sample D Female 6535.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73949734 Antisense, RP_051219_02_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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