MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.9 nTPM
HPA Brain:65.6 nTPM
GTEx:48.9 nTPM
FANTOM5:187.1 Scaled Tags Per Million
Pig:130.4 nTPM
Mouse:188.7 nTPM
Allen mouse:2.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 65.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.7
2019 Male, age 18, unknown 70.5
1870 Female, age 42, unknown 66.0
2411 Female, age 72, unknown 64.4
1827 Male, age 72, unknown 59.2
1833 Male, age 53, unknown 58.5
2586 Male, age 75, left hemisphere 57.4
1830 Male, age 51, unknown 56.6
2666 Male, age 74, left hemisphere 52.4
2828 Female, age 72, unknown 51.4
2219 Male, age 76, both hemispheres 50.8
Dorsal raphe nucleus
nTPM: 65.6
2298 Female, age 72, unknown 77.4
2047 Male, age 72, unknown 66.8
2750 Male, age 76, both hemispheres 64.0
2016 Female, age 72, unknown 60.7
1828 Male, age 53, unknown 59.0
Inferior colliculus
nTPM: 55.8
2097 Female, age 72, unknown 66.3
1890 Male, age 53, unknown 55.3
1848 Female, age 42, unknown 54.3
2849 Male, age 72, unknown 47.1
Median raphe nucleus
nTPM: 65.3
2220 Male, age 76, midline 65.3
Periaquaductal grey, anterior
nTPM: 64.9
1947 Male, age 18, unknown 67.9
2502 Female, age 75, unknown 65.3
1795 Male, age 51, unknown 61.3
Periaquaductal grey, dorsal
nTPM: 59.6
2850 Male, age 76, both hemispheres 66.6
2464 Female, age 72, unknown 59.8
1840 Male, age 53, unknown 59.7
1831 Male, age 72, unknown 52.1
Periaquaductal grey, lateral
nTPM: 58.6
2272 Male, age 74, both hemispheres 62.0
2140 Male, age 76, both hemispheres 58.7
2053 Male, age 18, unknown 55.1
Pretectal area
nTPM: 63.6
2007 Male, age 72, unknown 73.1
1817 Female, age 42, unknown 70.2
1815 Male, age 53, unknown 69.6
1816 Male, age 51, unknown 68.0
1944 Female, age 72, unknown 66.5
2224 Female, age 72, unknown 66.0
2273 Male, age 74, both hemispheres 64.2
2667 Female, age 75, unknown 63.9
2825 Male, age 18, unknown 56.3
2316 Male, age 76, right hemisphere 53.9
2407 Male, age 75, both hemispheres 48.3
Red nucleus
nTPM: 60.9
1821 Female, age 72, unknown 77.7
1904 Male, age 53, unknown 66.7
1954 Female, age 42, unknown 64.8
1865 Male, age 51, unknown 64.5
2785 Male, age 18, unknown 63.8
2725 Female, age 75, unknown 60.8
2503 Female, age 72, unknown 60.2
2769 Male, age 72, unknown 57.3
2227 Male, age 72, unknown 55.8
2823 Male, age 76, right hemisphere 53.3
2584 Male, age 75, left hemisphere 53.2
2588 Male, age 74, left hemisphere 52.5
Substantia nigra
nTPM: 62.5
2241 Male, age 72, unknown 74.9
1916 Female, age 42, unknown 70.4
1851 Male, age 51, unknown 66.7
2409 Female, age 72, unknown 66.4
1889 Female, age 72, unknown 64.8
2583 Male, age 75, right hemisphere 61.1
1941 Male, age 53, unknown 59.3
2590 Female, age 75, unknown 56.6
2699 Male, age 18, unknown 52.5
2665 Male, age 74, both hemispheres 52.0
Superior colliculus
nTPM: 55.7
2668 Female, age 75, unknown 59.4
1913 Female, age 42, unknown 58.7
1995 Male, age 72, unknown 58.7
1796 Male, age 53, unknown 58.5
2261 Male, age 18, unknown 58.5
2087 Female, age 72, unknown 57.9
1839 Male, age 51, unknown 54.3
1895 Male, age 76, right hemisphere 54.1
2587 Male, age 74, left hemisphere 53.1
2664 Male, age 75, both hemispheres 43.9
Ventral tegmental area
nTPM: 61.0
2410 Female, age 72, unknown 75.3
2223 Female, age 72, unknown 63.4
2218 Male, age 76, both hemispheres 59.2
1915 Female, age 42, unknown 58.7
1942 Male, age 51, unknown 54.8
2021 Male, age 53, unknown 54.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 48.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.9
Samples: 183

Max nTPM: 77.6
Min nTPM: 23.1
Std nTPM: 10.2
Median nTPM: 47.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 77.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 73.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 73.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 71.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 71.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 70.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 69.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 68.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 68.6
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 68.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 67.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 187.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 187.1
FF:10158-103A5 76 years, female 187.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 130.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 123.5
Samples: 4

Max nTPM: 153.6
Min nTPM: 99.5
Sample A Female 153.6
Sample B Female 99.5
Sample C Male 134.1
Sample D Male 106.8
Midbrain
nTPM: 130.4
Samples: 4

Max nTPM: 149.2
Min nTPM: 117.6
Sample A Female 149.2
Sample B Female 123.3
Sample C Male 131.5
Sample D Male 117.6
Periaqueductal gray
nTPM: 105.7
Samples: 3

Max nTPM: 110.9
Min nTPM: 100.7
Sample B Female 100.7
Sample C Male 110.9
Sample D Male 105.6
Superior colliculi
nTPM: 120.2
Samples: 4

Max nTPM: 138.5
Min nTPM: 91.7
Sample A Female 138.5
Sample B Female 91.7
Sample C Male 132.6
Sample D Male 117.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 188.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 188.8
Samples: 4

Max nTPM: 193.5
Min nTPM: 185.7
Sample A Male 186.0
Sample B Male 193.5
Sample C Female 189.8
Sample D Female 185.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
68545935 Antisense, RP_050120_01_G04, Mouse strain C57BL/6J (56 days, male) 2.4

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