A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
38.6
nTPM
Monaco:
163.3
nTPM
Schmiedel:
76.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.6
HPA sample
nTPM
Memory B-cell nTPM: 38.6
Samples: 6
Max nTPM: 72.1
Min nTPM: 11.5
P10809_1017
72.1
P10809_1025
38.0
P10809_1044
11.5
P10809_1063
32.1
P10809_1092
37.0
P10809_1105
40.7
Naive B-cell nTPM: 21.5
Samples: 6
Max nTPM: 40.9
Min nTPM: 9.4
P10809_1011
40.9
P10809_1029
16.7
P10809_1048
9.4
P10809_1067
14.3
P10809_1091
18.1
P10809_1104
29.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
163.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 118.4
Samples: 4
Max nTPM: 161.0
Min nTPM: 99.3
RHH5310_R3677
99.3
RHH5218_R3590
103.9
RHH5247_R3619
109.3
RHH5276_R3648
161.0
Naive B-cell nTPM: 87.7
Samples: 4
Max nTPM: 111.4
Min nTPM: 76.5
RHH5308_R3675
77.8
RHH5216_R3588
85.1
RHH5245_R3617
76.5
RHH5274_R3646
111.4
Non-switched memory B-cell nTPM: 128.8
Samples: 4
Max nTPM: 173.5
Min nTPM: 111.0
RHH5309_R3676
111.0
RHH5217_R3589
112.0
RHH5246_R3618
118.7
RHH5275_R3647
173.5
Plasmablast nTPM: 84.5
Samples: 4
Max nTPM: 119.6
Min nTPM: 42.5
RHH5312_R3679
42.5
RHH5220_R3592
106.2
RHH5249_R3621
119.6
RHH5278_R3650
69.6
Switched memory B-cell nTPM: 163.3
Samples: 4
Max nTPM: 238.5
Min nTPM: 106.4
RHH5311_R3678
106.4
RHH5219_R3591
158.2
RHH5248_R3620
150.0
RHH5277_R3649
238.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.4
Schmiedel sample id
TPM
Naive B-cell TPM: 76.4
Samples: 91
Max TPM: 131.8
Min TPM: 21.7
B_CELL_NAIVE_1
131.8
B_CELL_NAIVE_2
125.1
B_CELL_NAIVE_3
124.3
B_CELL_NAIVE_4
122.8
B_CELL_NAIVE_5
121.8
B_CELL_NAIVE_6
121.7
B_CELL_NAIVE_7
120.2
B_CELL_NAIVE_8
115.2
B_CELL_NAIVE_9
108.1
B_CELL_NAIVE_10
107.3
B_CELL_NAIVE_11
104.1
B_CELL_NAIVE_12
103.9
B_CELL_NAIVE_13
103.5
B_CELL_NAIVE_14
103.3
B_CELL_NAIVE_15
103.2
B_CELL_NAIVE_16
102.8
B_CELL_NAIVE_17
102.3
B_CELL_NAIVE_18
101.4
B_CELL_NAIVE_19
99.5
B_CELL_NAIVE_20
99.4
B_CELL_NAIVE_21
97.8
B_CELL_NAIVE_22
97.0
B_CELL_NAIVE_23
96.2
B_CELL_NAIVE_24
95.8
B_CELL_NAIVE_25
95.1
B_CELL_NAIVE_26
94.1
B_CELL_NAIVE_27
93.2
B_CELL_NAIVE_28
92.5
B_CELL_NAIVE_29
91.4
B_CELL_NAIVE_30
91.1
B_CELL_NAIVE_31
91.0
B_CELL_NAIVE_32
90.0
B_CELL_NAIVE_33
89.9
B_CELL_NAIVE_34
89.3
B_CELL_NAIVE_35
86.7
B_CELL_NAIVE_36
86.5
B_CELL_NAIVE_37
86.2
B_CELL_NAIVE_38
84.0
B_CELL_NAIVE_39
83.1
B_CELL_NAIVE_40
83.1
B_CELL_NAIVE_41
83.0
B_CELL_NAIVE_42
81.4
B_CELL_NAIVE_43
80.7
B_CELL_NAIVE_44
80.1
B_CELL_NAIVE_45
78.8
B_CELL_NAIVE_46
78.5
B_CELL_NAIVE_47
77.6
B_CELL_NAIVE_48
77.2
B_CELL_NAIVE_49
76.6
B_CELL_NAIVE_50
76.1
B_CELL_NAIVE_51
76.1
B_CELL_NAIVE_52
75.3
B_CELL_NAIVE_53
74.9
B_CELL_NAIVE_54
74.7
B_CELL_NAIVE_55
74.4
B_CELL_NAIVE_56
74.3
B_CELL_NAIVE_57
72.8
B_CELL_NAIVE_58
69.2
B_CELL_NAIVE_59
66.4
B_CELL_NAIVE_60
66.3
B_CELL_NAIVE_61
65.2
B_CELL_NAIVE_62
64.2
B_CELL_NAIVE_63
63.7
B_CELL_NAIVE_64
63.4
B_CELL_NAIVE_65
61.2
B_CELL_NAIVE_66
59.5
B_CELL_NAIVE_67
57.9
B_CELL_NAIVE_68
56.5
B_CELL_NAIVE_69
54.8
B_CELL_NAIVE_70
52.8
B_CELL_NAIVE_71
52.0
B_CELL_NAIVE_72
51.5
B_CELL_NAIVE_73
50.3
B_CELL_NAIVE_74
48.9
B_CELL_NAIVE_75
48.8
B_CELL_NAIVE_76
47.3
B_CELL_NAIVE_77
44.4
B_CELL_NAIVE_78
43.9
B_CELL_NAIVE_79
43.7
B_CELL_NAIVE_80
41.6
B_CELL_NAIVE_81
41.0
B_CELL_NAIVE_82
39.3
B_CELL_NAIVE_83
37.9
B_CELL_NAIVE_84
37.8
B_CELL_NAIVE_85
29.8
B_CELL_NAIVE_86
26.7
B_CELL_NAIVE_87
26.4
B_CELL_NAIVE_88
25.1
B_CELL_NAIVE_89
22.7
B_CELL_NAIVE_90
21.9
B_CELL_NAIVE_91
21.7
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
