A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.1
nTPM
Monaco:
55.3
nTPM
Schmiedel:
71.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.1
HPA sample
nTPM
Classical monocyte nTPM: 13.2
Samples: 6
Max nTPM: 18.8
Min nTPM: 9.0
P10809_1003
18.8
P10809_1020
12.2
P10809_1039
9.0
P10809_1058
12.2
P10809_1080
10.7
P10809_1107
16.0
Intermediate monocyte nTPM: 10.1
Samples: 6
Max nTPM: 22.6
Min nTPM: 3.0
P10809_1004
22.6
P10809_1023
3.9
P10809_1042
10.8
P10809_1061
3.0
P10809_1081
6.4
P10809_1108
13.7
Non-classical monocyte nTPM: 14.1
Samples: 5
Max nTPM: 26.6
Min nTPM: 5.9
P10809_1005
26.6
P10809_1053
5.9
P10809_1072
15.0
P10809_1082
7.0
P10809_1109
16.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.3
Monaco sample
nTPM
Classical monocyte nTPM: 55.3
Samples: 4
Max nTPM: 68.9
Min nTPM: 44.3
RHH5313_R3680
46.0
RHH5221_R3593
68.9
RHH5250_R3622
44.3
RHH5279_R3651
62.2
Intermediate monocyte nTPM: 39.8
Samples: 4
Max nTPM: 44.4
Min nTPM: 35.4
RHH5314_R3681
35.5
RHH5222_R3594
44.0
RHH5251_R3623
35.4
RHH5280_R3652
44.4
Non-classical monocyte nTPM: 40.0
Samples: 4
Max nTPM: 56.7
Min nTPM: 29.4
RHH5315_R3682
29.4
RHH5223_R3595
31.2
RHH5252_R3624
56.7
RHH5281_R3653
42.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.4
Schmiedel sample id
TPM
Classical monocyte TPM: 71.4
Samples: 91
Max TPM: 121.4
Min TPM: 34.7
MONOCYTES_1
121.4
MONOCYTES_2
113.7
MONOCYTES_3
112.6
MONOCYTES_4
100.2
MONOCYTES_5
97.7
MONOCYTES_6
96.0
MONOCYTES_7
95.4
MONOCYTES_8
94.8
MONOCYTES_9
94.7
MONOCYTES_10
94.0
MONOCYTES_11
93.6
MONOCYTES_12
93.4
MONOCYTES_13
93.0
MONOCYTES_14
91.9
MONOCYTES_15
91.4
MONOCYTES_16
91.4
MONOCYTES_17
91.0
MONOCYTES_18
90.3
MONOCYTES_19
89.8
MONOCYTES_20
88.9
MONOCYTES_21
88.7
MONOCYTES_22
88.4
MONOCYTES_23
88.4
MONOCYTES_24
88.3
MONOCYTES_25
86.9
MONOCYTES_26
86.3
MONOCYTES_27
86.2
MONOCYTES_28
84.6
MONOCYTES_29
84.2
MONOCYTES_30
83.8
MONOCYTES_31
81.0
MONOCYTES_32
77.0
MONOCYTES_33
76.5
MONOCYTES_34
76.4
MONOCYTES_35
76.4
MONOCYTES_36
74.1
MONOCYTES_37
73.1
MONOCYTES_38
73.0
MONOCYTES_39
72.4
MONOCYTES_40
72.2
MONOCYTES_41
71.8
MONOCYTES_42
70.8
MONOCYTES_43
70.6
MONOCYTES_44
69.6
MONOCYTES_45
69.6
MONOCYTES_46
69.6
MONOCYTES_47
69.3
MONOCYTES_48
69.1
MONOCYTES_49
68.9
MONOCYTES_50
68.8
MONOCYTES_51
68.7
MONOCYTES_52
68.0
MONOCYTES_53
66.7
MONOCYTES_54
66.3
MONOCYTES_55
66.0
MONOCYTES_56
65.5
MONOCYTES_57
63.8
MONOCYTES_58
63.1
MONOCYTES_59
63.0
MONOCYTES_60
61.2
MONOCYTES_61
59.7
MONOCYTES_62
59.3
MONOCYTES_63
59.2
MONOCYTES_64
58.9
MONOCYTES_65
58.8
MONOCYTES_66
58.7
MONOCYTES_67
58.6
MONOCYTES_68
57.7
MONOCYTES_69
55.3
MONOCYTES_70
55.3
MONOCYTES_71
55.1
MONOCYTES_72
54.8
MONOCYTES_73
54.5
MONOCYTES_74
53.8
MONOCYTES_75
53.6
MONOCYTES_76
53.6
MONOCYTES_77
53.1
MONOCYTES_78
53.0
MONOCYTES_79
52.3
MONOCYTES_80
51.5
MONOCYTES_81
48.2
MONOCYTES_82
47.4
MONOCYTES_83
45.8
MONOCYTES_84
45.0
MONOCYTES_85
44.8
MONOCYTES_86
44.4
MONOCYTES_87
43.9
MONOCYTES_88
42.3
MONOCYTES_89
42.1
MONOCYTES_90
41.6
MONOCYTES_91
34.7
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Non-classical monocyte TPM: 43.7
Samples: 90
Max TPM: 82.3
Min TPM: 13.1
M2_1
82.3
M2_2
74.6
M2_3
72.4
M2_4
70.1
M2_5
67.9
M2_6
67.0
M2_7
66.5
M2_8
64.2
M2_9
63.6
M2_10
62.9
M2_11
61.2
M2_12
60.6
M2_13
60.3
M2_14
60.0
M2_15
59.4
M2_16
58.7
M2_17
58.6
M2_18
58.3
M2_19
57.7
M2_20
56.4
M2_21
55.5
M2_22
55.4
M2_23
52.6
M2_24
51.9
M2_25
51.5
M2_26
50.7
M2_27
50.4
M2_28
50.3
M2_29
50.2
M2_30
49.8
M2_31
49.6
M2_32
49.5
M2_33
49.1
M2_34
48.5
M2_35
48.3
M2_36
48.1
M2_37
46.9
M2_38
46.7
M2_39
46.3
M2_40
45.9
M2_41
45.5
M2_42
45.1
M2_43
44.8
M2_44
44.6
M2_45
44.3
M2_46
44.2
M2_47
43.4
M2_48
43.2
M2_49
42.8
M2_50
42.6
M2_51
42.1
M2_52
41.6
M2_53
40.7
M2_54
40.2
M2_55
39.6
M2_56
39.5
M2_57
39.1
M2_58
38.6
M2_59
38.6
M2_60
36.8
M2_61
36.8
M2_62
36.5
M2_63
35.9
M2_64
34.9
M2_65
34.3
M2_66
34.3
M2_67
34.2
M2_68
33.2
M2_69
32.6
M2_70
32.5
M2_71
32.3
M2_72
29.9
M2_73
29.3
M2_74
29.2
M2_75
28.0
M2_76
25.0
M2_77
24.9
M2_78
24.8
M2_79
24.5
M2_80
24.1
M2_81
23.6
M2_82
23.4
M2_83
23.1
M2_84
22.4
M2_85
20.8
M2_86
20.6
M2_87
20.3
M2_88
17.2
M2_89
15.1
M2_90
13.1
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