MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68665.5 nTPM
HPA Brain:64388.0 nTPM
GTEx:68665.5 nTPM
Pig:9641.8 nTPM
Mouse:10220.7 nTPM
Allen mouse:5.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64388.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45302.4
2586 Male, age 75, left hemisphere 71339.0
2219 Male, age 76, both hemispheres 69015.3
2828 Female, age 72, unknown 56177.7
2666 Male, age 74, left hemisphere 56114.8
1833 Male, age 53, unknown 43187.7
1830 Male, age 51, unknown 39868.0
1870 Female, age 42, unknown 39088.9
1827 Male, age 72, unknown 29617.1
2019 Male, age 18, unknown 28786.9
2411 Female, age 72, unknown 19829.1
Dorsal raphe nucleus
nTPM: 27240.1
1828 Male, age 53, unknown 42283.7
2047 Male, age 72, unknown 31682.6
2750 Male, age 76, both hemispheres 27041.7
2016 Female, age 72, unknown 23799.1
2298 Female, age 72, unknown 11393.7
Inferior colliculus
nTPM: 37706.7
2849 Male, age 72, unknown 65685.7
1890 Male, age 53, unknown 37750.7
1848 Female, age 42, unknown 31662.7
2097 Female, age 72, unknown 15727.5
Median raphe nucleus
nTPM: 64388.0
2220 Male, age 76, midline 64388.0
Periaquaductal grey, anterior
nTPM: 26355.0
2502 Female, age 75, unknown 33552.1
1795 Male, age 51, unknown 24000.5
1947 Male, age 18, unknown 21512.3
Periaquaductal grey, dorsal
nTPM: 39853.3
2850 Male, age 76, both hemispheres 68734.3
1831 Male, age 72, unknown 34776.0
2464 Female, age 72, unknown 31397.2
1840 Male, age 53, unknown 24505.4
Periaquaductal grey, lateral
nTPM: 25019.8
2140 Male, age 76, both hemispheres 33703.4
2053 Male, age 18, unknown 24997.9
2272 Male, age 74, both hemispheres 16358.0
Pretectal area
nTPM: 37108.1
1816 Male, age 51, unknown 53573.2
1944 Female, age 72, unknown 51900.4
2667 Female, age 75, unknown 50446.9
1817 Female, age 42, unknown 50343.3
1815 Male, age 53, unknown 44164.8
2007 Male, age 72, unknown 40107.9
2825 Male, age 18, unknown 38312.7
2407 Male, age 75, both hemispheres 29644.3
2224 Female, age 72, unknown 19821.4
2316 Male, age 76, right hemisphere 15508.2
2273 Male, age 74, both hemispheres 14365.9
Red nucleus
nTPM: 41995.3
2503 Female, age 72, unknown 54465.5
2588 Male, age 74, left hemisphere 54281.9
2584 Male, age 75, left hemisphere 52213.7
1954 Female, age 42, unknown 45786.3
2823 Male, age 76, right hemisphere 45386.9
1865 Male, age 51, unknown 44650.8
2785 Male, age 18, unknown 40819.6
2227 Male, age 72, unknown 37528.2
2769 Male, age 72, unknown 35661.3
1904 Male, age 53, unknown 35374.6
2725 Female, age 75, unknown 30588.3
1821 Female, age 72, unknown 27186.0
Substantia nigra
nTPM: 41891.3
2699 Male, age 18, unknown 75170.4
2665 Male, age 74, both hemispheres 68663.0
1916 Female, age 42, unknown 54275.5
1941 Male, age 53, unknown 43172.4
1889 Female, age 72, unknown 36868.1
2583 Male, age 75, right hemisphere 33824.8
2241 Male, age 72, unknown 29051.8
2590 Female, age 75, unknown 27721.4
1851 Male, age 51, unknown 26957.5
2409 Female, age 72, unknown 23208.6
Superior colliculus
nTPM: 35614.6
2664 Male, age 75, both hemispheres 65466.4
2087 Female, age 72, unknown 39126.2
2587 Male, age 74, left hemisphere 38698.5
1913 Female, age 42, unknown 35093.4
2668 Female, age 75, unknown 33162.6
1839 Male, age 51, unknown 32013.7
1895 Male, age 76, right hemisphere 30888.3
1995 Male, age 72, unknown 29264.3
2261 Male, age 18, unknown 26423.8
1796 Male, age 53, unknown 26008.3
Ventral tegmental area
nTPM: 36319.4
2218 Male, age 76, both hemispheres 54848.8
2223 Female, age 72, unknown 44880.4
1942 Male, age 51, unknown 35392.9
1915 Female, age 42, unknown 31315.0
2021 Male, age 53, unknown 28014.3
2410 Female, age 72, unknown 23465.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 68665.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68665.5
Samples: 183

Max nTPM: 272452.7
Min nTPM: 2982.0
Std nTPM: 48706.4
Median nTPM: 54226.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 272452.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 240633.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 210091.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 209321.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 209034.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 207153.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 191770.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 188171.3
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 174873.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 167768.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 166758.9
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MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9641.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8206.1
Samples: 4

Max nTPM: 10245.2
Min nTPM: 5041.7
Sample A Female 9675.6
Sample B Female 7861.8
Sample C Male 10245.2
Sample D Male 5041.7
Midbrain
nTPM: 9641.9
Samples: 4

Max nTPM: 14130.9
Min nTPM: 5632.2
Sample A Female 8014.8
Sample B Female 14130.9
Sample C Male 10789.5
Sample D Male 5632.2
Periaqueductal gray
nTPM: 7279.3
Samples: 3

Max nTPM: 7913.0
Min nTPM: 6031.8
Sample B Female 7913.0
Sample C Male 7893.0
Sample D Male 6031.8
Superior colliculi
nTPM: 6988.7
Samples: 4

Max nTPM: 9794.4
Min nTPM: 1170.3
Sample A Female 8636.7
Sample B Female 1170.3
Sample C Male 9794.4
Sample D Male 8353.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10220.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 10220.7
Samples: 4

Max nTPM: 10680.2
Min nTPM: 9752.2
Sample A Male 10680.2
Sample B Male 10053.7
Sample C Female 10396.5
Sample D Female 9752.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
77280559 Antisense, RP_070116_01_F10, Mouse strain C57BL/6J (56 days, male) 11.9
74076114 Antisense, RP_051219_02_G07, Mouse strain C57BL/6J (56 days, male) 5.0
74076066 Antisense, RP_051219_02_F10, Mouse strain C57BL/6J (56 days, male) 0.0

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