MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59021.5 nTPM
HPA Brain:55199.2 nTPM
GTEx:59021.5 nTPM
Pig:18780.8 nTPM
Mouse:12252.9 nTPM
Allen mouse:25.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55199.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33262.9
2219 Male, age 76, both hemispheres 51312.6
2586 Male, age 75, left hemisphere 48598.5
2666 Male, age 74, left hemisphere 41259.9
2828 Female, age 72, unknown 36184.0
1870 Female, age 42, unknown 34788.1
1833 Male, age 53, unknown 34392.3
1830 Male, age 51, unknown 31881.9
1827 Male, age 72, unknown 20219.0
2019 Male, age 18, unknown 17790.3
2411 Female, age 72, unknown 16202.2
Dorsal raphe nucleus
nTPM: 19250.7
1828 Male, age 53, unknown 27560.9
2750 Male, age 76, both hemispheres 22785.4
2047 Male, age 72, unknown 21141.2
2016 Female, age 72, unknown 17437.7
2298 Female, age 72, unknown 7328.2
Inferior colliculus
nTPM: 33101.3
2849 Male, age 72, unknown 65406.7
1848 Female, age 42, unknown 29935.9
1890 Male, age 53, unknown 26519.3
2097 Female, age 72, unknown 10543.2
Median raphe nucleus
nTPM: 55199.2
2220 Male, age 76, midline 55199.2
Periaquaductal grey, anterior
nTPM: 20080.5
2502 Female, age 75, unknown 26574.2
1795 Male, age 51, unknown 17695.6
1947 Male, age 18, unknown 15971.6
Periaquaductal grey, dorsal
nTPM: 27205.7
2850 Male, age 76, both hemispheres 43122.8
2464 Female, age 72, unknown 25296.1
1840 Male, age 53, unknown 20599.8
1831 Male, age 72, unknown 19803.9
Periaquaductal grey, lateral
nTPM: 16352.3
2140 Male, age 76, both hemispheres 21887.7
2053 Male, age 18, unknown 16063.4
2272 Male, age 74, both hemispheres 11106.0
Pretectal area
nTPM: 24104.1
2667 Female, age 75, unknown 37113.8
1944 Female, age 72, unknown 32423.9
1817 Female, age 42, unknown 30539.5
2825 Male, age 18, unknown 30368.7
1816 Male, age 51, unknown 29505.5
1815 Male, age 53, unknown 29083.4
2007 Male, age 72, unknown 25823.6
2407 Male, age 75, both hemispheres 18855.1
2224 Female, age 72, unknown 14128.6
2316 Male, age 76, right hemisphere 9148.3
2273 Male, age 74, both hemispheres 8154.6
Red nucleus
nTPM: 32475.5
2503 Female, age 72, unknown 44954.1
2588 Male, age 74, left hemisphere 41235.2
1954 Female, age 42, unknown 39299.2
1865 Male, age 51, unknown 36583.4
2823 Male, age 76, right hemisphere 36153.0
2584 Male, age 75, left hemisphere 32460.4
2227 Male, age 72, unknown 30749.7
1904 Male, age 53, unknown 29512.3
2785 Male, age 18, unknown 28911.5
2769 Male, age 72, unknown 27687.2
2725 Female, age 75, unknown 23164.1
1821 Female, age 72, unknown 18996.2
Substantia nigra
nTPM: 36662.8
2665 Male, age 74, both hemispheres 80788.8
2699 Male, age 18, unknown 70554.1
1916 Female, age 42, unknown 40037.0
1941 Male, age 53, unknown 31995.3
2241 Male, age 72, unknown 28398.1
1889 Female, age 72, unknown 25440.0
2583 Male, age 75, right hemisphere 24576.1
2409 Female, age 72, unknown 23736.1
1851 Male, age 51, unknown 23165.3
2590 Female, age 75, unknown 17936.8
Superior colliculus
nTPM: 25143.4
2664 Male, age 75, both hemispheres 41096.0
2087 Female, age 72, unknown 28234.3
2587 Male, age 74, left hemisphere 26833.4
2668 Female, age 75, unknown 26014.7
1839 Male, age 51, unknown 23601.9
1913 Female, age 42, unknown 23462.8
1796 Male, age 53, unknown 22323.5
1895 Male, age 76, right hemisphere 22321.1
1995 Male, age 72, unknown 19123.4
2261 Male, age 18, unknown 18423.1
Ventral tegmental area
nTPM: 31467.6
2218 Male, age 76, both hemispheres 54940.1
2223 Female, age 72, unknown 38411.2
1942 Male, age 51, unknown 29283.4
2410 Female, age 72, unknown 23594.1
1915 Female, age 42, unknown 23165.9
2021 Male, age 53, unknown 19410.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 59021.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59021.5
Samples: 183

Max nTPM: 240746.2
Min nTPM: 7533.2
Std nTPM: 38578.1
Median nTPM: 48038.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 240746.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 207247.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 170981.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 167289.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 158487.9
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 147730.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 144590.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 139819.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 139393.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 138319.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 137992.6
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MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18780.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15080.4
Samples: 4

Max nTPM: 19584.1
Min nTPM: 9435.4
Sample A Female 19584.1
Sample B Female 13598.0
Sample C Male 17704.3
Sample D Male 9435.4
Midbrain
nTPM: 18780.8
Samples: 4

Max nTPM: 26459.4
Min nTPM: 12207.2
Sample A Female 17470.8
Sample B Female 26459.4
Sample C Male 18985.8
Sample D Male 12207.2
Periaqueductal gray
nTPM: 14597.6
Samples: 3

Max nTPM: 15556.8
Min nTPM: 12741.0
Sample B Female 15495.1
Sample C Male 15556.8
Sample D Male 12741.0
Superior colliculi
nTPM: 14709.6
Samples: 4

Max nTPM: 20035.1
Min nTPM: 2863.7
Sample A Female 17477.6
Sample B Female 2863.7
Sample C Male 20035.1
Sample D Male 18462.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12252.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 12253.0
Samples: 4

Max nTPM: 12796.9
Min nTPM: 11875.8
Sample A Male 12279.9
Sample B Male 12059.2
Sample C Female 12796.9
Sample D Female 11875.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 25.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 25.1
74357749 Antisense, RP_051219_04_A03, Mouse strain C57BL/6J (56 days, male) 25.1

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