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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • MT-ATP6
EVOLUTIONARY MIDBRAIN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:82909.3 nTPM
HPA Brain:59382.9 nTPM
GTEx:82909.3 nTPM
Macaque:64508.4 nTPM
Mouse:7405.2 nTPM
Rat:16347.0 nTPM
Pig:40589.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59382.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45359.8
2586 Male, age 75, left hemisphere 74971.5
2219 Male, age 76, both hemispheres 71181.3
2666 Male, age 74, left hemisphere 56094.3
2828 Female, age 72, unknown 52938.3
1833 Male, age 53, unknown 42635.9
1830 Male, age 51, unknown 39046.1
1870 Female, age 42, unknown 37988.2
1827 Male, age 72, unknown 30227.3
2019 Male, age 18, unknown 27796.3
2411 Female, age 72, unknown 20718.6
Dorsal raphe nucleus
nTPM: 25520.4
1828 Male, age 53, unknown 40552.3
2047 Male, age 72, unknown 28901.2
2750 Male, age 76, both hemispheres 25423.5
2016 Female, age 72, unknown 22147.4
2298 Female, age 72, unknown 10577.6
Inferior colliculus
nTPM: 37183.4
2849 Male, age 72, unknown 67942.8
1890 Male, age 53, unknown 35261.5
1848 Female, age 42, unknown 31099.4
2097 Female, age 72, unknown 14430.1
Median raphe nucleus
nTPM: 59382.9
2220 Male, age 76, midline 59382.9
Periaquaductal grey, anterior
nTPM: 24685.1
2502 Female, age 75, unknown 29986.5
1795 Male, age 51, unknown 22806.2
1947 Male, age 18, unknown 21262.7
Periaquaductal grey, dorsal
nTPM: 37521.5
2850 Male, age 76, both hemispheres 64946.3
1831 Male, age 72, unknown 32201.1
2464 Female, age 72, unknown 29431.6
1840 Male, age 53, unknown 23507.0
Periaquaductal grey, lateral
nTPM: 21506.0
2140 Male, age 76, both hemispheres 28259.1
2053 Male, age 18, unknown 22767.5
2272 Male, age 74, both hemispheres 13491.4
Pretectal area
nTPM: 35860.6
1817 Female, age 42, unknown 51898.6
1816 Male, age 51, unknown 50435.2
2667 Female, age 75, unknown 50365.3
1944 Female, age 72, unknown 49531.9
1815 Male, age 53, unknown 44031.2
2007 Male, age 72, unknown 42990.9
2825 Male, age 18, unknown 36191.1
2407 Male, age 75, both hemispheres 26009.1
2224 Female, age 72, unknown 17408.0
2316 Male, age 76, right hemisphere 14086.0
2273 Male, age 74, both hemispheres 11519.4
Red nucleus
nTPM: 40025.0
2588 Male, age 74, left hemisphere 53114.9
2503 Female, age 72, unknown 50131.1
2584 Male, age 75, left hemisphere 49642.4
2823 Male, age 76, right hemisphere 46167.0
1954 Female, age 42, unknown 42740.8
1865 Male, age 51, unknown 39692.1
2785 Male, age 18, unknown 37632.0
2227 Male, age 72, unknown 35513.7
2769 Male, age 72, unknown 34353.7
1904 Male, age 53, unknown 32362.6
1821 Female, age 72, unknown 30014.7
2725 Female, age 75, unknown 28935.1
Substantia nigra
nTPM: 41450.6
2665 Male, age 74, both hemispheres 76539.2
2699 Male, age 18, unknown 73369.6
1916 Female, age 42, unknown 54920.9
1941 Male, age 53, unknown 41563.2
1889 Female, age 72, unknown 35762.4
2583 Male, age 75, right hemisphere 34360.6
1851 Male, age 51, unknown 27683.2
2590 Female, age 75, unknown 25462.9
2241 Male, age 72, unknown 23124.6
2409 Female, age 72, unknown 21719.2
Superior colliculus
nTPM: 33337.2
2664 Male, age 75, both hemispheres 60342.2
2587 Male, age 74, left hemisphere 38609.9
2087 Female, age 72, unknown 35115.4
2668 Female, age 75, unknown 32985.2
1913 Female, age 42, unknown 31404.5
1839 Male, age 51, unknown 30753.7
1895 Male, age 76, right hemisphere 28614.8
1995 Male, age 72, unknown 27974.8
1796 Male, age 53, unknown 23959.9
2261 Male, age 18, unknown 23611.7
Ventral tegmental area
nTPM: 35687.5
2218 Male, age 76, both hemispheres 56848.3
2223 Female, age 72, unknown 41406.7
1942 Male, age 51, unknown 34825.4
1915 Female, age 42, unknown 28849.5
2021 Male, age 53, unknown 27797.9
2410 Female, age 72, unknown 24397.4

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82909.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 82909.3
Samples: 183

Max nTPM: 295516.1
Min nTPM: 4704.2
Std nTPM: 53181.8
Median nTPM: 67476.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 295516.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 279463.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 251194.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 236499.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 229507.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 209522.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 208290.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 204111.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 199392.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 198865.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 193109.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 190230.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 187581.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 182807.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 174084.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 172920.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 169529.6
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 168651.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 166916.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 166343.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 164286.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 160773.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 160648.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 149598.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 142562.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 142443.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 141127.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 139105.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 132016.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 130001.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 124382.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 119080.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 117402.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 116896.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 111970.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 111144.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 110590.2
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 110536.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 109044.0
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 107447.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 106192.7
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 106170.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 104750.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 100158.9
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 98459.0
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 96932.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 96024.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 95041.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 94257.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 94059.9
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 92498.3
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 92182.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 92158.8
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 90477.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 89575.3
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 89325.2
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 89202.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 88831.8
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 86559.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 85546.6
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 85245.8
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 84638.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 84566.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 84044.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 83917.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 83469.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 82073.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 81935.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 81760.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 81588.5
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 78450.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 76800.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 76189.1
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 75788.5
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 75674.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 75356.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 75058.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 75055.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 73668.2
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 72489.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 71616.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 71260.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 70980.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 70704.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 70010.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 69608.1
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 69313.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 69089.1
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 69068.7
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 68541.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 67972.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 67476.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 67221.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 66559.0
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 66517.1
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 66419.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 65848.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 64840.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 64352.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 63092.2
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 63052.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 62718.3
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 61858.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 61785.3
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 60540.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 60026.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 59371.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 57093.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 56699.9
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 56550.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 56025.5
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 55629.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 54358.6
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 54205.9
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 53821.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 53756.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 53212.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 52949.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 52638.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 52627.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 52400.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 51835.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 51743.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 51604.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 51475.9
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 51451.1
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 51033.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 50919.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 50908.6
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 50569.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50520.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 50310.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 49063.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 47946.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 47717.3
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 47575.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 47523.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 47298.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 46875.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 46789.9
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 46554.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 46447.4
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 46027.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 45889.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 45382.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 45203.6
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 44250.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 44184.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 43770.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 43288.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 42790.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 42460.5
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 41120.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 41008.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 40554.2
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 40050.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 39809.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 39425.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 39315.1
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 38748.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 38225.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 37934.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 36568.4
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 35200.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 34670.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 34647.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 34062.6
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 33768.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 31753.2
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 31456.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 31158.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 31007.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 30628.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 29419.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 29157.6
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 28589.6
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 28439.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 26118.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 20450.4
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 18786.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 17410.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 15206.7
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 4704.2
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MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64508.4
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 64508.4
Samples: 1

Max nTPM: 64508.4
Min nTPM: 64508.4
Sample A 64508.4
Midbrain
nTPM: 53541.4
Samples: 1

Max nTPM: 53541.4
Min nTPM: 53541.4
Sample A 53541.4
Superior colliculi
nTPM: 38495.5
Samples: 1

Max nTPM: 38495.5
Min nTPM: 38495.5
Sample A 38495.5

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40589.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35570.4
Samples: 3

Max nTPM: 42141.0
Min nTPM: 28271.3
Sample A Female 42141.0
Sample B Female 28271.3
Sample C Male 36299.0
Midbrain
nTPM: 40589.7
Samples: 3

Max nTPM: 50590.6
Min nTPM: 30486.5
Sample B Female 50590.6
Sample C Male 40692.0
Sample D Male 30486.5
Periaqueductal gray
nTPM: 28143.1
Samples: 3

Max nTPM: 31178.8
Min nTPM: 24296.3
Sample B Female 28954.3
Sample C Male 31178.8
Sample D Male 24296.3
Superior colliculi
nTPM: 31471.6
Samples: 4

Max nTPM: 40494.3
Min nTPM: 11439.2
Sample A Female 39358.6
Sample B Female 11439.2
Sample C Male 40494.3
Sample D Male 34594.4

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7405.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 7405.2
Samples: 4

Max nTPM: 8321.8
Min nTPM: 4898.3
Sample A 8100.0
Sample B 4898.3
Sample C 8321.8
Sample D 8300.6

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16347.0
Rat sample Sample description nTPM
Midbrain
nTPM: 16347.0
Samples: 4

Max nTPM: 18646.1
Min nTPM: 15021.8
Sample A 16236.1
Sample A 15483.9
Sample A 15021.8
Sample A 18646.1

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