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BETA
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  • MT-ATP6
EVOLUTIONARY PONS Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
PONS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:71679.5 nTPM
Macaque:69308.8 nTPM
Mouse:3370.3 nTPM
Rat:21794.3 nTPM
Pig:41055.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain Stereo-seq

PONS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71679.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 48165.3
2301 Female, age 85, both hemispheres 97316.9
2188 Female, age 91, both hemispheres 37149.1
1984 Male, age 76, both hemispheres 34185.2
2090 Male, age 80, both hemispheres 24009.9
Dorsal cochlear nucleus
nTPM: 54485.4
2378 Male, age 80, both hemispheres 90147.3
2802 Male, age 74, right hemisphere 66418.9
2058 Male, age 76, both hemispheres 38989.0
2187 Female, age 91, both hemispheres 38555.9
2370 Male, age 61, both hemispheres 38315.8
Dorsal tegmental nucleus
nTPM: 46218.8
2358 Male, age 61, both hemispheres 82591.3
1936 Male, age 76, left hemisphere 38412.4
2083 Male, age 80, both hemispheres 33701.1
2326 Male, age 74, both hemispheres 30170.3
Dorsolateral tegmental area
nTPM: 31387.5
2141 Male, age 76, both hemispheres 48941.5
2337 Male, age 61, both hemispheres 39430.4
2654 Male, age 80, both hemispheres 33924.9
2751 Female, age 85, both hemispheres 18853.8
2360 Male, age 74, both hemispheres 15786.7
Kolliker-Fuse nucleus
nTPM: 45242.5
2793 Female, age 91, left hemisphere 79940.8
2163 Male, age 80, both hemispheres 40948.3
2315 Male, age 76, right hemisphere 14838.4
Lateral lemniscal nuclei
nTPM: 39949.7
2320 Female, age 91, left hemisphere 63264.4
2169 Male, age 76, both hemispheres 49591.6
2453 Male, age 74, right hemisphere 49314.3
2036 Male, age 80, both hemispheres 25038.4
2746 Female, age 85, left hemisphere 12539.8
Lateral parabrachial nucleus
nTPM: 28765.6
2790 Male, age 61, both hemispheres 39576.4
2792 Male, age 76, both hemispheres 36964.2
2139 Female, age 85, right hemisphere 21829.4
2013 Male, age 80, both hemispheres 16692.4
Lateral vestibular nucleus
nTPM: 64007.9
2184 Male, age 76, both hemispheres 70051.8
2311 Male, age 80, both hemispheres 57964.0
Locus coeruleus
nTPM: 39128.4
2720 Male, age 74, both hemispheres 77416.1
2162 Male, age 80, both hemispheres 52021.0
2788 Male, age 74, unknown 36211.0
2317 Female, age 72, unknown 32238.3
1980 Male, age 76, both hemispheres 28988.1
2014 Male, age 55, unknown 27869.5
2123 Female, age 91, both hemispheres 19154.8
Medial parabrachial nucleus
nTPM: 36530.1
2854 Male, age 80, both hemispheres 60734.6
2786 Male, age 76, both hemispheres 47189.1
2156 Male, age 61, both hemispheres 39620.1
2170 Female, age 91, both hemispheres 26415.5
2463 Female, age 85, right hemisphere 8691.2
Medial periolivary nuclei
nTPM: 36236.1
2458 Female, age 91, both hemispheres 72219.7
2171 Female, age 85, both hemispheres 44321.9
2063 Male, age 76, both hemispheres 25181.6
2791 Male, age 74, right hemisphere 19979.5
2081 Male, age 80, both hemispheres 19477.8
Motor facial nucleus
nTPM: 64942.5
2795 Female, age 91, both hemispheres 128048.1
2697 Female, age 85, both hemispheres 95477.6
2327 Male, age 80, both hemispheres 89174.6
2365 Male, age 74, right hemisphere 27819.1
2062 Male, age 76, both hemispheres 26500.6
2126 Male, age 61, both hemispheres 22634.9
Motor trigeminal nucleus
nTPM: 44493.1
2321 Female, age 91, both hemispheres 72082.4
2309 Male, age 76, both hemispheres 43305.3
2335 Male, age 61, both hemispheres 40325.7
2560 Male, age 74, both hemispheres 40086.3
2079 Male, age 80, both hemispheres 26665.9
Nuclei of the trapezoid body
nTPM: 37947.7
2368 Female, age 91, both hemispheres 69798.9
2166 Male, age 80, both hemispheres 42893.2
1983 Male, age 76, both hemispheres 31048.2
2159 Male, age 61, both hemispheres 23745.8
2735 Female, age 85, both hemispheres 22252.7
Nucleus raphe magnus
nTPM: 47210.8
2328 Male, age 80, both hemispheres 69841.9
2459 Female, age 91, both hemispheres 62407.8
2172 Female, age 85, both hemispheres 58777.7
2051 Male, age 76, both hemispheres 34871.6
2455 Male, age 74, both hemispheres 34366.1
2160 Male, age 61, both hemispheres 22999.7
Paramedian reticular nucleus
nTPM: 31063.4
2313 Male, age 61, both hemispheres 42013.7
2050 Female, age 85, both hemispheres 34198.0
2052 Male, age 76, both hemispheres 30983.3
2057 Male, age 80, both hemispheres 17058.8
Pedunculopontine tegmental nucleus
nTPM: 41107.8
2334 Male, age 80, both hemispheres 53061.3
2338 Male, age 61, both hemispheres 48028.7
1921 Female, age 85, both hemispheres 22233.4
Pontine nuclei
nTPM: 24168.3
2319 Female, age 91, both hemispheres 44344.3
2787 Female, age 85, both hemispheres 34472.3
2115 Male, age 80, left hemisphere 24984.9
2454 Male, age 74, left hemisphere 24011.8
1863 Male, age 55, unknown 21833.2
1968 Male, age 76, left hemisphere 21123.5
2109 Female, age 72, unknown 13309.0
2727 Male, age 61, right hemisphere 9267.4
Pontine raphe nucleus
nTPM: 38036.2
2853 Male, age 76, midline 50033.6
2122 Female, age 85, midline 26038.9
Posteroventral cochlear nucleus
nTPM: 30497.3
2341 Male, age 80, both hemispheres 47027.6
2371 Male, age 61, both hemispheres 41380.8
2752 Female, age 85, both hemispheres 26248.9
2070 Male, age 76, both hemispheres 19578.4
2135 Female, age 91, both hemispheres 18251.0
Principal sensory trigeminal nucleus
nTPM: 50978.5
2324 Male, age 76, both hemispheres 99971.9
2367 Female, age 91, left hemisphere 61886.7
2158 Male, age 61, both hemispheres 22735.6
2008 Male, age 80, left hemisphere 19319.6
Reticular pontine nucleus, caudal
nTPM: 51801.1
2332 Male, age 80, right hemisphere 84224.4
2457 Female, age 91, both hemispheres 66601.4
2559 Male, age 74, both hemispheres 30374.7
2092 Male, age 76, both hemispheres 26003.7
Reticular pontine nucleus, oral
nTPM: 37090.6
2366 Female, age 91, both hemispheres 77336.5
2167 Male, age 76, both hemispheres 45776.7
1939 Male, age 80, both hemispheres 24774.1
2012 Female, age 85, both hemispheres 18987.2
2361 Male, age 74, both hemispheres 18578.6
Reticulotegmental nucleus
nTPM: 71679.5
2322 Female, age 91, both hemispheres 87704.8
2333 Male, age 80, both hemispheres 80043.3
2325 Male, age 76, both hemispheres 68335.1
2452 Male, age 74, both hemispheres 50634.8
Spinal trigeminal nucleus, oral
nTPM: 44487.5
2164 Male, age 80, both hemispheres 77411.0
1978 Male, age 76, both hemispheres 33927.1
2737 Female, age 85, both hemispheres 22124.4
Subcoeruleus area
nTPM: 31027.6
2323 Female, age 91, left hemisphere 41343.3
2451 Male, age 74, both hemispheres 36163.1
1958 Male, age 80, both hemispheres 32670.4
2089 Male, age 76, left hemisphere 27556.7
2369 Female, age 85, left hemisphere 17404.3
Superior olive
nTPM: 43442.6
2561 Female, age 91, both hemispheres 88578.2
2329 Male, age 80, right hemisphere 72444.8
2020 Male, age 76, both hemispheres 21227.6
1875 Female, age 85, both hemispheres 18497.7
2364 Male, age 74, right hemisphere 16464.4
Ventral periolivary nuclei
nTPM: 43406.4
2794 Female, age 91, left hemisphere 74780.0
2165 Male, age 80, both hemispheres 50506.6
2130 Female, age 85, both hemispheres 33256.8
2023 Male, age 76, both hemispheres 15082.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 50406.5
2840 Female, age 85, both hemispheres 70779.0
2456 Female, age 91, both hemispheres 62838.4
2359 Male, age 61, both hemispheres 57780.9
2161 Male, age 80, both hemispheres 45604.3
2449 Male, age 74, both hemispheres 33136.0
1959 Male, age 76, both hemispheres 32300.4

PONS - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69308.8
Macaque sample Sample description nTPM
Pons
nTPM: 69308.8
Samples: 2

Max nTPM: 69798.1
Min nTPM: 68819.4
Sample A 69798.1
Sample B 68819.4

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41055.2
Pig sample Sample description nTPM
Pons
nTPM: 41055.2
Samples: 3

Max nTPM: 49156.4
Min nTPM: 29351.9
Sample A Female 49156.4
Sample B Female 29351.9
Sample C Male 44657.4

PONS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3370.3
Mouse sample Sample description nTPM
Pons
nTPM: 3370.3
Samples: 4

Max nTPM: 3749.8
Min nTPM: 2921.9
Sample A 3749.8
Sample B 2921.9
Sample C 3396.5
Sample D 3413.1

PONS - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21794.3
Rat sample Sample description nTPM
Pons
nTPM: 21794.3
Samples: 4

Max nTPM: 23743.4
Min nTPM: 17401.1
Sample A 22675.1
Sample A 23743.4
Sample A 17401.1
Sample A 23357.5

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