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  • RPL39
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1327.3 nTPM
HPA Brain:271.2 nTPM
GTEx:1327.3 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:0.7 nTPM
Mouse:323.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

271.2
Sample id Sample description nTPM
Amygdala
nTPM: 271.2
2695 Female, age 67, right hemisphere 342.0
2514 Male, age 75, right hemisphere 284.1
2814 Male, age 76, right hemisphere 262.9
1987 Female, age 91, left hemisphere 252.9
2517 Female, age 94, left hemisphere 214.3
Basal amygdala
nTPM: 198.6
2827 Female, age 67, right hemisphere 290.5
2609 Male, age 75, right hemisphere 211.3
2110 Male, age 80, left hemisphere 210.5
2685 Female, age 94, left hemisphere 181.6
1955 Male, age 76, both hemispheres 174.0
2243 Female, age 91, right hemisphere 123.7
Central amygdala
nTPM: 237.4
2826 Female, age 94, left hemisphere 376.2
2515 Male, age 75, right hemisphere 249.5
1905 Male, age 76, both hemispheres 248.6
2701 Female, age 91, right hemisphere 160.2
2239 Male, age 80, left hemisphere 152.7
Corticomedial amygdala
nTPM: 175.0
2428 Male, age 75, right hemisphere 225.0
2829 Male, age 80, left hemisphere 190.8
2535 Female, age 67, right hemisphere 164.3
2240 Male, age 76, both hemispheres 164.0
2429 Female, age 94, left hemisphere 162.8
2242 Female, age 91, right hemisphere 143.4
Lateral amygdala
nTPM: 235.9
2830 Female, age 67, right hemisphere 356.6
2516 Male, age 75, right hemisphere 292.8
2534 Female, age 94, left hemisphere 260.9
1883 Male, age 76, both hemispheres 201.7
2256 Male, age 80, left hemisphere 183.7
2255 Female, age 91, right hemisphere 119.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1327.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1327.3
Samples: 181

Max nTPM: 4301.4
Min nTPM: 569.5
Std nTPM: 552.8
Median nTPM: 1204.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4301.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3965.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3714.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3009.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2821.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2714.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2450.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2390.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2372.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2281.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2266.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2175.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2153.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2080.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 2076.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1990.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1941.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1931.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1914.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1898.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1823.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1820.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1769.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1745.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1735.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1710.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1679.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1664.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1648.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1630.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1613.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1611.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1608.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1599.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1593.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1591.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1586.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1579.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1576.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1575.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1571.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1569.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1562.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1547.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1543.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1533.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1524.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1522.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1500.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1497.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1496.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1487.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1482.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1467.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1464.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1456.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1443.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1412.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1404.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1400.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1397.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1383.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1380.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1369.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1366.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1359.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1355.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1354.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1353.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1351.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1341.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1340.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1312.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1300.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1284.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1270.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1269.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1268.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1267.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1267.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1266.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1263.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1255.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1238.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1236.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1236.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1235.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1216.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1211.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1208.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1204.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1204.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1204.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1199.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1186.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1183.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1172.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1165.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1161.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1155.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1138.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1136.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1135.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1130.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1117.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1113.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1099.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1097.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1096.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1089.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1087.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1086.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1083.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1082.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1080.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1067.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1066.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1064.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1062.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1060.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1049.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1045.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1043.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1039.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1034.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1029.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1027.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1027.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1022.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1021.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1006.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1006.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 996.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 993.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 988.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 984.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 982.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 979.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 978.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 971.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 969.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 952.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 943.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 942.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 939.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 937.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 932.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 931.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 930.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 928.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 924.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 920.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 919.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 916.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 902.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 893.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 875.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 868.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 833.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 827.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 824.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 824.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 812.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 810.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 809.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 798.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 792.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 791.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 784.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 780.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 766.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 753.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 740.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 740.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 682.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 682.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 659.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 653.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 645.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 613.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 569.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 26.7
FF:10151-102I7 76 years, female 26.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.7
Pig sample Sample description nTPM
Amygdala
nTPM: 0.8
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 1.2
Sample C Male 1.8
Sample D Male 0.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

323.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 323.6
Samples: 4

Max nTPM: 349.4
Min nTPM: 299.1
Sample A Male 299.1
Sample B Male 335.3
Sample C Female 349.4
Sample D Female 310.5

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