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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2530.3 nTPM
GTEx:2530.3 nTPM
FANTOM5:60.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA047105
Squamous epithelial cells Not detected


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2530.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2530.3
Samples: 170

Max nTPM: 7310.1
Min nTPM: 1119.2
Std nTPM: 849.6
Median nTPM: 2425.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 7310.1
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 6951.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 5207.4
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 4367.1
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 4356.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 4178.9
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 4123.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3903.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 3739.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 3723.0
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 3699.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 3663.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 3602.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 3557.9
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 3537.5
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 3463.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 3457.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 3445.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 3437.2
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 3436.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 3363.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 3356.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 3344.1
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 3310.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 3301.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 3289.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 3246.0
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 3225.8
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 3134.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 3121.4
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 3097.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 3089.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 3088.5
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 3042.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 3023.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2997.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2993.8
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2984.8
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2977.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2950.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2945.0
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 2920.6
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 2905.6
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2905.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2884.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2862.4
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 2850.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2843.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2825.2
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 2793.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2792.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2787.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2716.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2713.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2683.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2676.8
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 2662.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2661.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2643.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2636.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2634.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2633.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2630.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2622.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2619.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2593.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2586.2
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 2583.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2578.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2572.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2560.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2559.5
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 2551.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2549.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2537.8
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2535.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2524.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 2519.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2515.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2513.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2507.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2470.9
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 2460.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2437.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2433.0
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2416.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2360.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2358.1
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 2342.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2335.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 2329.0
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 2320.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2317.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2316.3
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2314.7
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2307.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2292.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2255.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2242.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2234.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2230.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 2230.3
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 2207.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 2197.8
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 2197.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2184.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 2175.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 2171.5
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 2135.6
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 2116.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2115.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2110.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 2106.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 2104.4
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2103.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2076.2
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 2055.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 2054.9
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2049.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 2044.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 2043.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 2033.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2025.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2015.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 2014.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2014.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1955.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1953.0
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1927.8
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1927.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1927.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1925.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1921.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1910.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1888.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1875.6
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1863.4
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 1829.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1818.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1785.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1784.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1779.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1747.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1746.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1744.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1708.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1698.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1697.4
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1697.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1687.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1685.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1681.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1671.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1667.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1661.3
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1644.1
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1637.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1630.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1630.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1613.5
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1608.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1606.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1604.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1570.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1507.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1493.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1462.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1443.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1310.7
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1119.2
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

60.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 60.9
FF:10204-103F6 68 years, female 60.9

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