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RPL39
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • RPL39
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:892.9 nTPM
FANTOM5:28.1 Scaled Tags Per Million
Pig:0.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA047105
Glial cells Not detected
Neuronal cells Not detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

892.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 892.9
Samples: 300

Max nTPM: 2991.3
Min nTPM: 445.5
Std nTPM: 301.6
Median nTPM: 851.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2991.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2259.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2042.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 2016.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1972.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1807.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1671.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1593.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1593.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1553.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1540.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1517.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1500.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1499.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1468.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1468.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1451.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1428.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1416.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1401.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1389.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1317.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1279.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1272.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1261.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1257.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1251.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1248.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1241.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1240.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1238.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1235.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1233.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1218.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1205.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1179.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1175.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1149.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1142.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1131.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1119.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1112.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1112.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1107.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1102.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1099.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1091.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1087.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1085.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1085.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1079.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1066.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1060.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1055.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1055.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1054.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1052.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1052.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1047.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1043.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1040.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1036.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1036.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1035.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1029.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1024.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1023.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1021.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1016.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1014.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1007.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1005.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 999.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 999.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 998.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 996.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 995.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 992.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 992.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 990.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 990.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 986.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 986.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 984.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 974.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 974.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 972.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 971.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 962.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 959.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 953.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 949.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 947.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 946.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 944.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 944.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 943.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 942.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 942.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 939.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 936.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 935.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 934.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 930.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 925.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 924.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 923.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 923.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 922.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 917.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 917.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 916.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 915.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 912.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 904.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 902.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 902.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 901.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 901.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 900.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 894.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 892.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 890.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 888.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 888.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 885.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 883.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 881.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 878.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 874.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 874.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 872.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 872.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 872.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 871.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 870.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 870.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 870.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 868.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 866.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 865.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 863.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 862.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 858.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 856.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 856.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 855.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 853.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 852.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 852.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 850.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 840.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 838.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 835.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 834.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 830.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 828.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 827.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 826.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 824.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 823.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 822.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 822.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 820.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 820.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 814.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 814.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 813.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 809.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 809.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 807.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 806.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 806.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 806.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 794.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 789.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 784.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 783.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 783.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 781.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 780.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 779.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 776.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 774.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 773.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 772.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 771.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 769.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 768.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 763.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 762.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 761.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 761.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 759.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 758.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 758.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 754.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 752.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 751.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 750.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 747.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 745.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 745.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 741.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 740.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 738.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 738.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 733.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 723.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 721.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 717.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 717.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 715.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 713.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 713.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 712.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 708.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 708.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 706.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 706.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 705.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 705.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 703.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 703.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 702.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 702.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 701.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 701.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 697.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 696.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 694.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 686.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 685.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 682.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 681.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 676.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 674.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 672.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 666.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 657.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 656.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 654.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 651.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 649.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 648.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 647.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 643.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 642.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 641.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 640.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 637.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 636.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 636.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 635.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 633.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 632.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 630.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 623.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 622.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 619.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 619.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 618.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 617.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 614.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 607.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 606.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 605.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 604.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 599.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 598.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 597.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 592.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 592.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 590.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 587.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 587.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 586.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 586.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 586.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 585.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 584.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 582.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 582.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 580.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 570.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 557.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 555.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 554.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 550.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 545.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 543.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 518.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 518.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 514.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 512.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 502.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 484.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 473.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 473.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 445.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

28.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.1
FF:10164-103B2 76 years, female 28.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

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