MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA Brain:8.2 nTPM
GTEx:19.2 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:11.6 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 8.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.2
2666 Male, age 74, left hemisphere 20.2
2586 Male, age 75, left hemisphere 15.0
1827 Male, age 72, unknown 8.7
2411 Female, age 72, unknown 7.6
2219 Male, age 76, both hemispheres 5.6
1830 Male, age 51, unknown 4.5
2828 Female, age 72, unknown 3.9
1870 Female, age 42, unknown 3.4
2019 Male, age 18, unknown 2.0
1833 Male, age 53, unknown 1.4
Dorsal raphe nucleus
nTPM: 4.7
2047 Male, age 72, unknown 7.7
2750 Male, age 76, both hemispheres 6.8
2016 Female, age 72, unknown 3.9
2298 Female, age 72, unknown 2.9
1828 Male, age 53, unknown 2.1
Inferior colliculus
nTPM: 3.6
1890 Male, age 53, unknown 5.9
1848 Female, age 42, unknown 3.8
2097 Female, age 72, unknown 3.4
2849 Male, age 72, unknown 1.4
Median raphe nucleus
nTPM: 4.1
2220 Male, age 76, midline 4.1
Periaquaductal grey, anterior
nTPM: 5.7
1795 Male, age 51, unknown 9.6
2502 Female, age 75, unknown 5.0
1947 Male, age 18, unknown 2.4
Periaquaductal grey, dorsal
nTPM: 5.0
1831 Male, age 72, unknown 8.3
2464 Female, age 72, unknown 5.5
2850 Male, age 76, both hemispheres 3.7
1840 Male, age 53, unknown 2.3
Periaquaductal grey, lateral
nTPM: 6.3
2053 Male, age 18, unknown 6.9
2140 Male, age 76, both hemispheres 6.6
2272 Male, age 74, both hemispheres 5.4
Pretectal area
nTPM: 5.4
2825 Male, age 18, unknown 11.8
1817 Female, age 42, unknown 7.8
1815 Male, age 53, unknown 7.6
2667 Female, age 75, unknown 6.3
2316 Male, age 76, right hemisphere 5.7
1944 Female, age 72, unknown 5.1
2407 Male, age 75, both hemispheres 4.7
2007 Male, age 72, unknown 4.5
1816 Male, age 51, unknown 4.4
2224 Female, age 72, unknown 1.2
2273 Male, age 74, both hemispheres 0.4
Red nucleus
nTPM: 8.2
2588 Male, age 74, left hemisphere 15.6
2785 Male, age 18, unknown 11.3
2503 Female, age 72, unknown 10.8
2769 Male, age 72, unknown 10.3
1904 Male, age 53, unknown 9.5
1865 Male, age 51, unknown 9.1
1954 Female, age 42, unknown 7.0
2227 Male, age 72, unknown 6.6
2823 Male, age 76, right hemisphere 5.5
1821 Female, age 72, unknown 5.1
2725 Female, age 75, unknown 5.1
2584 Male, age 75, left hemisphere 1.9
Substantia nigra
nTPM: 5.6
1851 Male, age 51, unknown 10.1
2699 Male, age 18, unknown 9.3
1941 Male, age 53, unknown 8.5
1916 Female, age 42, unknown 7.9
2583 Male, age 75, right hemisphere 7.1
2590 Female, age 75, unknown 5.3
1889 Female, age 72, unknown 4.1
2409 Female, age 72, unknown 1.2
2665 Male, age 74, both hemispheres 1.2
2241 Male, age 72, unknown 0.9
Superior colliculus
nTPM: 7.3
2587 Male, age 74, left hemisphere 14.9
2664 Male, age 75, both hemispheres 14.3
1913 Female, age 42, unknown 7.2
1995 Male, age 72, unknown 7.1
1796 Male, age 53, unknown 6.5
1839 Male, age 51, unknown 6.4
2668 Female, age 75, unknown 5.7
2087 Female, age 72, unknown 4.4
2261 Male, age 18, unknown 3.2
1895 Male, age 76, right hemisphere 3.0
Ventral tegmental area
nTPM: 4.8
2410 Female, age 72, unknown 7.3
2021 Male, age 53, unknown 6.4
2223 Female, age 72, unknown 5.0
1915 Female, age 42, unknown 4.9
2218 Male, age 76, both hemispheres 4.6
1942 Male, age 51, unknown 0.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.2
Samples: 183

Max nTPM: 33.2
Min nTPM: 9.7
Std nTPM: 4.4
Median nTPM: 18.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 33.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 32.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 32.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 29.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 29.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 28.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 27.4
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 27.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 27.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 26.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 26.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.9
FF:10158-103A5 76 years, female 14.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.9
Samples: 4

Max nTPM: 17.3
Min nTPM: 13.9
Sample A Female 16.6
Sample B Female 13.9
Sample C Male 15.7
Sample D Male 17.3
Midbrain
nTPM: 16.5
Samples: 4

Max nTPM: 20.2
Min nTPM: 14.3
Sample A Female 20.2
Sample B Female 14.3
Sample C Male 16.1
Sample D Male 15.4
Periaqueductal gray
nTPM: 14.4
Samples: 3

Max nTPM: 16.1
Min nTPM: 13.3
Sample B Female 13.7
Sample C Male 16.1
Sample D Male 13.3
Superior colliculi
nTPM: 16.1
Samples: 4

Max nTPM: 17.3
Min nTPM: 14.4
Sample A Female 17.0
Sample B Female 15.6
Sample C Male 14.4
Sample D Male 17.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.6
Samples: 4

Max nTPM: 13.0
Min nTPM: 10.2
Sample A Male 13.0
Sample B Male 11.7
Sample C Female 10.2
Sample D Female 11.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69626630 Antisense, RP_050428_01_A07, Mouse strain C57BL/6J (56 days, male) 0.3

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