MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:403.5 nTPM
HPA Brain:2.6 nTPM
GTEx:403.5 nTPM
FANTOM5:1899.7 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 2.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.3
1833 Male, age 53, unknown 3.4
2019 Male, age 18, unknown 2.5
1827 Male, age 72, unknown 1.7
1830 Male, age 51, unknown 1.2
2666 Male, age 74, left hemisphere 1.1
2586 Male, age 75, left hemisphere 1.0
2219 Male, age 76, both hemispheres 0.9
2411 Female, age 72, unknown 0.9
1870 Female, age 42, unknown 0.3
2828 Female, age 72, unknown 0.2
Dorsal raphe nucleus
nTPM: 2.6
2016 Female, age 72, unknown 4.6
2047 Male, age 72, unknown 4.4
1828 Male, age 53, unknown 2.2
2298 Female, age 72, unknown 1.1
2750 Male, age 76, both hemispheres 0.9
Inferior colliculus
nTPM: 0.8
2097 Female, age 72, unknown 1.4
1890 Male, age 53, unknown 1.0
2849 Male, age 72, unknown 0.7
1848 Female, age 42, unknown 0.0
Median raphe nucleus
nTPM: 0.9
2220 Male, age 76, midline 0.9
Periaquaductal grey, anterior
nTPM: 1.6
2502 Female, age 75, unknown 2.7
1795 Male, age 51, unknown 1.2
1947 Male, age 18, unknown 1.0
Periaquaductal grey, dorsal
nTPM: 1.6
1831 Male, age 72, unknown 2.6
1840 Male, age 53, unknown 2.1
2850 Male, age 76, both hemispheres 0.9
2464 Female, age 72, unknown 0.7
Periaquaductal grey, lateral
nTPM: 1.4
2053 Male, age 18, unknown 2.0
2272 Male, age 74, both hemispheres 1.4
2140 Male, age 76, both hemispheres 0.9
Pretectal area
nTPM: 2.0
1944 Female, age 72, unknown 5.1
2407 Male, age 75, both hemispheres 3.5
1817 Female, age 42, unknown 2.2
2273 Male, age 74, both hemispheres 2.2
2224 Female, age 72, unknown 1.9
1815 Male, age 53, unknown 1.7
1816 Male, age 51, unknown 1.2
2667 Female, age 75, unknown 1.1
2316 Male, age 76, right hemisphere 1.0
2825 Male, age 18, unknown 1.0
2007 Male, age 72, unknown 0.8
Red nucleus
nTPM: 1.0
1954 Female, age 42, unknown 2.4
2503 Female, age 72, unknown 2.1
1865 Male, age 51, unknown 1.2
1821 Female, age 72, unknown 1.1
2588 Male, age 74, left hemisphere 1.1
2584 Male, age 75, left hemisphere 1.0
2785 Male, age 18, unknown 1.0
1904 Male, age 53, unknown 0.9
2823 Male, age 76, right hemisphere 0.9
2725 Female, age 75, unknown 0.6
2769 Male, age 72, unknown 0.4
2227 Male, age 72, unknown 0.0
Substantia nigra
nTPM: 1.8
1941 Male, age 53, unknown 3.2
2590 Female, age 75, unknown 2.5
2583 Male, age 75, right hemisphere 2.3
1889 Female, age 72, unknown 2.2
2409 Female, age 72, unknown 2.2
1851 Male, age 51, unknown 1.2
2241 Male, age 72, unknown 1.2
2665 Male, age 74, both hemispheres 1.1
2699 Male, age 18, unknown 1.0
1916 Female, age 42, unknown 0.9
Superior colliculus
nTPM: 1.3
1995 Male, age 72, unknown 3.8
1895 Male, age 76, right hemisphere 2.0
1913 Female, age 42, unknown 2.0
1839 Male, age 51, unknown 1.2
2587 Male, age 74, left hemisphere 1.1
2261 Male, age 18, unknown 1.0
2664 Male, age 75, both hemispheres 1.0
2668 Female, age 75, unknown 0.6
2087 Female, age 72, unknown 0.1
1796 Male, age 53, unknown 0.0
Ventral tegmental area
nTPM: 1.0
1915 Female, age 42, unknown 2.4
2410 Female, age 72, unknown 1.4
1942 Male, age 51, unknown 1.2
2218 Male, age 76, both hemispheres 0.9
2021 Male, age 53, unknown 0.0
2223 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 403.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 403.5
Samples: 183

Max nTPM: 3692.4
Min nTPM: 27.8
Std nTPM: 539.7
Median nTPM: 199.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 3692.4
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 2533.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 2511.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 2472.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 2135.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 1858.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1628.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1605.4
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 1569.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 1560.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1493.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1899.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1899.7
FF:10158-103A5 76 years, female 1899.7

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