MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:663.1 nTPM
HPA Brain:3.8 nTPM
GTEx:663.1 nTPM
FANTOM5:2881.5 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 3.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.8
2219 Male, age 76, both hemispheres 29.1
2586 Male, age 75, left hemisphere 1.5
1830 Male, age 51, unknown 1.1
1870 Female, age 42, unknown 1.0
2411 Female, age 72, unknown 1.0
2019 Male, age 18, unknown 0.9
2828 Female, age 72, unknown 0.9
1827 Male, age 72, unknown 0.8
1833 Male, age 53, unknown 0.8
2666 Male, age 74, left hemisphere 0.6
Dorsal raphe nucleus
nTPM: 0.8
1828 Male, age 53, unknown 1.0
2047 Male, age 72, unknown 1.0
2298 Female, age 72, unknown 1.0
2016 Female, age 72, unknown 0.9
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 0.8
2097 Female, age 72, unknown 1.0
1848 Female, age 42, unknown 0.9
2849 Male, age 72, unknown 0.8
1890 Male, age 53, unknown 0.7
Median raphe nucleus
nTPM: 0.8
2220 Male, age 76, midline 0.8
Periaquaductal grey, anterior
nTPM: 0.9
1795 Male, age 51, unknown 1.7
1947 Male, age 18, unknown 0.7
2502 Female, age 75, unknown 0.2
Periaquaductal grey, dorsal
nTPM: 0.7
2464 Female, age 72, unknown 1.0
1831 Male, age 72, unknown 0.9
1840 Male, age 53, unknown 0.7
2850 Male, age 76, both hemispheres 0.5
Periaquaductal grey, lateral
nTPM: 0.8
2140 Male, age 76, both hemispheres 1.0
2053 Male, age 18, unknown 0.9
2272 Male, age 74, both hemispheres 0.6
Pretectal area
nTPM: 1.2
2667 Female, age 75, unknown 4.2
2407 Male, age 75, both hemispheres 2.5
2273 Male, age 74, both hemispheres 1.2
2224 Female, age 72, unknown 1.0
1817 Female, age 42, unknown 0.9
1944 Female, age 72, unknown 0.9
2007 Male, age 72, unknown 0.8
1815 Male, age 53, unknown 0.7
2316 Male, age 76, right hemisphere 0.7
2825 Male, age 18, unknown 0.7
1816 Male, age 51, unknown 0.2
Red nucleus
nTPM: 0.7
1865 Male, age 51, unknown 1.5
2785 Male, age 18, unknown 1.3
2503 Female, age 72, unknown 1.0
1821 Female, age 72, unknown 0.9
1954 Female, age 42, unknown 0.9
2227 Male, age 72, unknown 0.9
2769 Male, age 72, unknown 0.8
1904 Male, age 53, unknown 0.7
2588 Male, age 74, left hemisphere 0.6
2725 Female, age 75, unknown 0.2
2584 Male, age 75, left hemisphere 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 1.0
2583 Male, age 75, right hemisphere 1.7
2699 Male, age 18, unknown 1.6
1851 Male, age 51, unknown 1.4
2409 Female, age 72, unknown 1.0
1889 Female, age 72, unknown 0.9
1916 Female, age 42, unknown 0.9
2241 Male, age 72, unknown 0.8
1941 Male, age 53, unknown 0.7
2665 Male, age 74, both hemispheres 0.6
2590 Female, age 75, unknown 0.2
Superior colliculus
nTPM: 1.0
1796 Male, age 53, unknown 1.4
1895 Male, age 76, right hemisphere 1.3
2664 Male, age 75, both hemispheres 1.3
2668 Female, age 75, unknown 1.3
1995 Male, age 72, unknown 1.1
1913 Female, age 42, unknown 0.9
2087 Female, age 72, unknown 0.9
2261 Male, age 18, unknown 0.6
2587 Male, age 74, left hemisphere 0.6
1839 Male, age 51, unknown 0.5
Ventral tegmental area
nTPM: 1.2
2021 Male, age 53, unknown 2.2
2223 Female, age 72, unknown 1.4
1915 Female, age 42, unknown 1.2
1942 Male, age 51, unknown 1.0
2410 Female, age 72, unknown 1.0
2218 Male, age 76, both hemispheres 0.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 663.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 663.1
Samples: 183

Max nTPM: 4395.4
Min nTPM: 43.4
Std nTPM: 935.5
Median nTPM: 300.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 4395.4
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 4277.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 4129.9
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 4123.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 4099.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 4004.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 3786.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 3445.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 3299.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2790.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 2718.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2881.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2881.5
FF:10158-103A5 76 years, female 2881.5

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