MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:131.3 nTPM
HPA Brain:19.0 nTPM
GTEx:131.3 nTPM
FANTOM5:145.5 Scaled Tags Per Million
Pig:108.8 nTPM
Mouse:148.9 nTPM
Allen mouse:1.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.0
2586 Male, age 75, left hemisphere 57.3
1870 Female, age 42, unknown 14.5
1827 Male, age 72, unknown 13.6
1833 Male, age 53, unknown 13.4
2019 Male, age 18, unknown 13.0
2828 Female, age 72, unknown 13.0
1830 Male, age 51, unknown 12.5
2219 Male, age 76, both hemispheres 11.7
2411 Female, age 72, unknown 11.0
2666 Male, age 74, left hemisphere 10.5
Dorsal raphe nucleus
nTPM: 12.5
2047 Male, age 72, unknown 14.7
2016 Female, age 72, unknown 14.0
2750 Male, age 76, both hemispheres 11.8
1828 Male, age 53, unknown 11.0
2298 Female, age 72, unknown 11.0
Inferior colliculus
nTPM: 13.1
2849 Male, age 72, unknown 14.3
1848 Female, age 42, unknown 13.1
1890 Male, age 53, unknown 12.6
2097 Female, age 72, unknown 12.4
Median raphe nucleus
nTPM: 13.5
2220 Male, age 76, midline 13.5
Periaquaductal grey, anterior
nTPM: 14.0
1947 Male, age 18, unknown 15.3
1795 Male, age 51, unknown 13.4
2502 Female, age 75, unknown 13.4
Periaquaductal grey, dorsal
nTPM: 12.6
2850 Male, age 76, both hemispheres 15.9
2464 Female, age 72, unknown 13.0
1831 Male, age 72, unknown 10.8
1840 Male, age 53, unknown 10.6
Periaquaductal grey, lateral
nTPM: 12.5
2053 Male, age 18, unknown 14.0
2140 Male, age 76, both hemispheres 12.5
2272 Male, age 74, both hemispheres 11.2
Pretectal area
nTPM: 14.5
2407 Male, age 75, both hemispheres 18.5
1817 Female, age 42, unknown 16.6
2007 Male, age 72, unknown 16.3
1816 Male, age 51, unknown 15.9
2224 Female, age 72, unknown 15.7
1944 Female, age 72, unknown 15.0
2667 Female, age 75, unknown 14.9
2825 Male, age 18, unknown 12.5
2273 Male, age 74, both hemispheres 12.1
2316 Male, age 76, right hemisphere 11.4
1815 Male, age 53, unknown 10.2
Red nucleus
nTPM: 14.1
2584 Male, age 75, left hemisphere 18.5
1865 Male, age 51, unknown 16.8
2227 Male, age 72, unknown 16.2
2725 Female, age 75, unknown 15.8
2785 Male, age 18, unknown 14.3
2503 Female, age 72, unknown 14.2
1954 Female, age 42, unknown 12.9
1821 Female, age 72, unknown 12.8
2823 Male, age 76, right hemisphere 12.4
2769 Male, age 72, unknown 12.1
2588 Male, age 74, left hemisphere 11.8
1904 Male, age 53, unknown 11.2
Substantia nigra
nTPM: 12.6
2699 Male, age 18, unknown 15.9
1916 Female, age 42, unknown 14.9
2665 Male, age 74, both hemispheres 14.2
1851 Male, age 51, unknown 14.0
2590 Female, age 75, unknown 13.0
1889 Female, age 72, unknown 12.6
2409 Female, age 72, unknown 11.0
2241 Male, age 72, unknown 10.8
2583 Male, age 75, right hemisphere 10.5
1941 Male, age 53, unknown 9.2
Superior colliculus
nTPM: 19.0
1796 Male, age 53, unknown 67.1
1913 Female, age 42, unknown 17.1
1995 Male, age 72, unknown 15.3
2664 Male, age 75, both hemispheres 14.4
2668 Female, age 75, unknown 13.6
2587 Male, age 74, left hemisphere 13.4
2261 Male, age 18, unknown 12.9
1895 Male, age 76, right hemisphere 12.7
1839 Male, age 51, unknown 12.5
2087 Female, age 72, unknown 11.2
Ventral tegmental area
nTPM: 13.4
2218 Male, age 76, both hemispheres 14.6
1915 Female, age 42, unknown 14.4
2223 Female, age 72, unknown 14.3
1942 Male, age 51, unknown 13.8
2410 Female, age 72, unknown 12.9
2021 Male, age 53, unknown 10.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 131.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 131.3
Samples: 183

Max nTPM: 208.9
Min nTPM: 90.2
Std nTPM: 22.1
Median nTPM: 127.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 208.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 199.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 198.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 189.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 184.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 183.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 181.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 181.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 177.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 172.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 169.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 145.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 145.5
FF:10158-103A5 76 years, female 145.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 108.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 95.1
Samples: 4

Max nTPM: 121.2
Min nTPM: 78.6
Sample A Female 121.2
Sample B Female 78.6
Sample C Male 95.2
Sample D Male 85.3
Midbrain
nTPM: 97.7
Samples: 4

Max nTPM: 123.4
Min nTPM: 78.1
Sample A Female 123.4
Sample B Female 86.4
Sample C Male 102.9
Sample D Male 78.1
Periaqueductal gray
nTPM: 84.1
Samples: 3

Max nTPM: 89.1
Min nTPM: 74.5
Sample B Female 88.6
Sample C Male 89.1
Sample D Male 74.5
Superior colliculi
nTPM: 108.8
Samples: 4

Max nTPM: 120.9
Min nTPM: 89.2
Sample A Female 115.8
Sample B Female 89.2
Sample C Male 120.9
Sample D Male 109.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 148.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 149.0
Samples: 4

Max nTPM: 151.3
Min nTPM: 143.1
Sample A Male 150.4
Sample B Male 143.1
Sample C Female 151.3
Sample D Female 151.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
68076534 Antisense, RP_040923_02_E05, Mouse strain C57BL/6J (56 days, male) 1.6

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