MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:215.2 nTPM
HPA Brain:63.1 nTPM
GTEx:215.2 nTPM
FANTOM5:283.5 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.5
2666 Male, age 74, left hemisphere 24.4
2019 Male, age 18, unknown 19.6
2828 Female, age 72, unknown 19.3
1830 Male, age 51, unknown 17.5
1870 Female, age 42, unknown 16.0
2411 Female, age 72, unknown 15.5
2586 Male, age 75, left hemisphere 14.4
1827 Male, age 72, unknown 11.1
2219 Male, age 76, both hemispheres 9.4
1833 Male, age 53, unknown 7.8
Dorsal raphe nucleus
nTPM: 18.0
2016 Female, age 72, unknown 27.6
2298 Female, age 72, unknown 19.7
2750 Male, age 76, both hemispheres 19.1
2047 Male, age 72, unknown 14.7
1828 Male, age 53, unknown 9.2
Inferior colliculus
nTPM: 14.6
1848 Female, age 42, unknown 19.1
2097 Female, age 72, unknown 15.5
2849 Male, age 72, unknown 12.6
1890 Male, age 53, unknown 11.3
Median raphe nucleus
nTPM: 20.8
2220 Male, age 76, midline 20.8
Periaquaductal grey, anterior
nTPM: 18.1
1795 Male, age 51, unknown 20.2
2502 Female, age 75, unknown 19.0
1947 Male, age 18, unknown 15.1
Periaquaductal grey, dorsal
nTPM: 19.9
2850 Male, age 76, both hemispheres 34.6
1831 Male, age 72, unknown 21.7
2464 Female, age 72, unknown 15.5
1840 Male, age 53, unknown 7.8
Periaquaductal grey, lateral
nTPM: 23.4
2140 Male, age 76, both hemispheres 36.9
2053 Male, age 18, unknown 18.3
2272 Male, age 74, both hemispheres 15.1
Pretectal area
nTPM: 15.0
2316 Male, age 76, right hemisphere 22.5
2273 Male, age 74, both hemispheres 18.3
1817 Female, age 42, unknown 16.0
1944 Female, age 72, unknown 15.6
2224 Female, age 72, unknown 15.5
2407 Male, age 75, both hemispheres 14.4
2667 Female, age 75, unknown 14.2
2825 Male, age 18, unknown 13.9
2007 Male, age 72, unknown 13.2
1816 Male, age 51, unknown 11.7
1815 Male, age 53, unknown 9.3
Red nucleus
nTPM: 18.1
2588 Male, age 74, left hemisphere 24.8
1821 Female, age 72, unknown 23.2
1865 Male, age 51, unknown 20.8
2769 Male, age 72, unknown 20.1
2227 Male, age 72, unknown 19.0
2785 Male, age 18, unknown 18.7
2725 Female, age 75, unknown 18.1
2823 Male, age 76, right hemisphere 16.4
1954 Female, age 42, unknown 16.0
2503 Female, age 72, unknown 15.5
2584 Male, age 75, left hemisphere 14.4
1904 Male, age 53, unknown 10.0
Substantia nigra
nTPM: 18.0
2409 Female, age 72, unknown 29.5
2699 Male, age 18, unknown 24.2
1851 Male, age 51, unknown 23.2
2590 Female, age 75, unknown 18.0
2241 Male, age 72, unknown 16.2
1916 Female, age 42, unknown 16.0
1889 Female, age 72, unknown 15.8
2665 Male, age 74, both hemispheres 15.1
2583 Male, age 75, right hemisphere 14.4
1941 Male, age 53, unknown 7.8
Superior colliculus
nTPM: 22.8
1796 Male, age 53, unknown 86.8
1995 Male, age 72, unknown 24.4
2668 Female, age 75, unknown 16.6
1913 Female, age 42, unknown 16.0
1839 Male, age 51, unknown 15.4
2587 Male, age 74, left hemisphere 15.1
2664 Male, age 75, both hemispheres 14.4
2087 Female, age 72, unknown 13.9
2261 Male, age 18, unknown 13.8
1895 Male, age 76, right hemisphere 11.2
Ventral tegmental area
nTPM: 63.1
2021 Male, age 53, unknown 286.8
2218 Male, age 76, both hemispheres 23.2
1942 Male, age 51, unknown 20.3
2223 Female, age 72, unknown 16.6
1915 Female, age 42, unknown 16.0
2410 Female, age 72, unknown 15.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 215.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 215.2
Samples: 183

Max nTPM: 744.1
Min nTPM: 44.0
Std nTPM: 95.1
Median nTPM: 193.6
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 744.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 601.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 580.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 470.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 411.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 408.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 391.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 390.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 388.4
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 385.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 378.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 283.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 283.5
FF:10158-103A5 76 years, female 283.5

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