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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • RACK1
EVOLUTIONARY HIPPOCAMPAL FORMATION Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:354.2 nTPM
HPA Brain:215.9 nTPM
GTEx:354.2 nTPM
FANTOM5:506.2 Scaled Tags Per Million
Macaque:161.4 nTPM
Mouse:141.2 nTPM
Rat:126.2 nTPM
Pig:165.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB004288
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 55395
Sample Intensity
Hippocampal formation_01
43196
Hippocampal formation_02
56039
Hippocampal formation_03
16869
Hippocampal formation_04
55377
Hippocampal formation_05
55414
Hippocampal formation_06
72716

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.9
Sample id Sample description nTPM
Dentate gyrus
nTPM: 215.9
2530 Female, age 94, left hemisphere 250.1
2528 Male, age 74, both hemispheres 221.6
2531 Female, age 67, both hemispheres 221.5
2010 Male, age 76, both hemispheres 220.4
2246 Female, age 85, both hemispheres 200.5
1927 Female, age 91, both hemispheres 181.5
Entorhinal gyrus
nTPM: 194.7
2117 Female, age 91, right hemisphere 229.2
2686 Male, age 75, right hemisphere 218.0
2764 Male, age 80, right hemisphere 205.5
1787 Male, age 76, left hemisphere 190.2
2613 Female, age 94, left hemisphere 163.4
1938 Female, age 85, left hemisphere 161.7
Hippocampus, CA1
nTPM: 200.5
2045 Male, age 76, both hemispheres 206.7
2082 Female, age 91, right hemisphere 206.3
2749 Male, age 80, left hemisphere 201.3
2527 Male, age 74, both hemispheres 195.9
1873 Female, age 85, both hemispheres 192.1
Hippocampus, CA2
nTPM: 203.8
1963 Male, age 80, left hemisphere 231.1
2437 Female, age 94, left hemisphere 207.1
1940 Female, age 85, left hemisphere 199.1
2249 Male, age 74, both hemispheres 198.5
1892 Male, age 76, both hemispheres 194.0
2113 Female, age 91, right hemisphere 193.3
Hippocampus, CA3
nTPM: 199.7
2861 Female, age 67, both hemispheres 224.2
2436 Male, age 74, both hemispheres 219.7
1867 Male, age 76, both hemispheres 216.3
1891 Female, age 85, both hemispheres 197.5
2137 Male, age 80, left hemisphere 172.3
2620 Female, age 94, left hemisphere 168.1
Parahippocampal cortex
nTPM: 186.6
2018 Male, age 76, both hemispheres 234.2
2245 Female, age 91, both hemispheres 196.6
2532 Female, age 72, left hemisphere 193.7
2250 Female, age 67, right hemisphere 192.4
1850 Male, age 80, both hemispheres 188.5
1990 Female, age 91, right hemisphere 187.7
2622 Female, age 67, right hemisphere 177.1
1933 Female, age 85, both hemispheres 176.7
2692 Male, age 74, both hemispheres 176.3
2693 Female, age 94, both hemispheres 142.8
Perirhinal gyrus
nTPM: 186.8
2521 Female, age 94, right hemisphere 196.9
1794 Male, age 80, right hemisphere 193.0
1847 Female, age 91, left hemisphere 188.0
1841 Female, age 85, right hemisphere 182.5
2848 Male, age 76, right hemisphere 173.4
Subiculum
nTPM: 199.4
2042 Male, age 76, both hemispheres 235.7
1977 Female, age 85, both hemispheres 201.4
2438 Female, age 94, left hemisphere 191.8
2619 Male, age 74, both hemispheres 191.2
1901 Male, age 80, both hemispheres 188.0
2729 Female, age 91, right hemisphere 188.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

354.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 354.2
Samples: 255

Max nTPM: 713.2
Min nTPM: 209.2
Std nTPM: 81.2
Median nTPM: 335.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 713.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 646.3
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 627.8
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 616.8
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 577.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 547.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 547.3
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 544.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 529.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 522.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 510.5
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 505.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 505.2
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 504.2
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 491.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 488.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 483.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 476.5
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 475.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 474.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 471.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 471.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 468.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 466.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 463.7
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 462.6
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 462.6
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 460.1
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 454.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 449.7
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 448.8
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 446.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 444.3
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 442.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 440.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 440.6
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 439.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 439.2
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 438.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 437.5
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 437.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 432.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 431.5
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 431.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 431.0
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 428.5
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 426.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 424.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 424.0
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 421.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 420.0
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 418.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 412.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 412.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 411.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 410.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 409.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 408.3
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 406.9
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 406.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 403.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 403.3
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 403.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 401.7
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 401.7
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 398.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 395.0
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 394.8
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 394.2
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 393.6
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 393.5
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 393.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 391.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 391.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 390.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 390.1
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 389.2
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 386.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 386.2
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 386.0
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 384.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 382.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 381.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 381.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 378.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 375.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 374.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 374.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 373.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 372.1
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 371.8
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 367.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 365.9
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 365.2
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 365.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 364.9
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 364.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 361.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 360.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 360.1
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 359.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 359.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 358.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 357.5
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 357.1
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 356.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 353.2
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 352.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 351.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 351.1
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 350.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 348.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 348.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 348.0
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 345.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 341.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 341.0
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 340.7
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 340.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 339.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 338.2
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 338.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 337.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 336.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 335.9
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 335.4
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 335.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 335.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 334.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 334.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 333.6
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 331.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 331.6
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 331.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 331.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 330.9
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 329.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 329.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 328.2
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 327.8
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 326.8
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 325.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 325.3
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 324.1
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 322.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 322.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 322.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 321.7
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 321.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 321.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 321.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 321.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 320.8
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 320.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 319.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 318.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 317.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 316.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 315.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 314.9
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 314.5
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 312.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 311.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 310.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 310.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 309.2
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 308.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 307.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 307.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 305.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 305.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 305.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 305.1
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 304.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 303.9
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 303.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 303.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 303.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 303.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 300.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 300.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 299.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 299.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 299.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 299.4
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 298.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 296.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 295.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 295.4
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 294.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 293.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 292.9
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 292.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 292.4
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 292.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 291.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 291.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 291.7
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 289.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 288.9
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 288.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 288.0
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 287.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 286.0
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 285.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 285.4
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 285.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 285.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 284.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 283.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 282.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 282.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 282.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 280.3
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 280.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 278.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 278.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 276.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 276.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 276.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 275.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 275.5
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 275.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 274.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 273.3
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 272.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 269.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 268.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 268.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 268.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 265.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 264.7
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 264.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 263.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 263.1
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 262.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 262.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 262.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 261.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 261.4
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 260.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 260.4
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 260.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 258.1
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 257.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 254.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 254.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 248.4
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 245.4
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 245.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 232.3
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 230.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 215.9
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 211.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 209.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

506.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 506.2
FF:10153-102I9 76 years, female 516.1
FF:10169-103B7 60 years, female 496.4

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.4
Macaque sample Sample description nTPM
Subiculum
nTPM: 141.1
Samples: 1

Max nTPM: 141.1
Min nTPM: 141.1
Sample A 141.1
Entorhinal cortex
nTPM: 161.4
Samples: 2

Max nTPM: 171.3
Min nTPM: 151.4
Sample A 151.4
Sample B 171.3
Hippocampal formation
nTPM: 151.0
Samples: 4

Max nTPM: 165.9
Min nTPM: 126.9
Sample A 149.0
Sample B 126.9
Sample C 162.3
Sample D 165.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.6
Pig sample Sample description nTPM
Subiculum
nTPM: 159.0
Samples: 4

Max nTPM: 203.1
Min nTPM: 135.1
Sample A Female 203.1
Sample B Female 153.1
Sample C Male 144.7
Sample D Male 135.1
Dorsal hippocampus
nTPM: 165.6
Samples: 4

Max nTPM: 194.9
Min nTPM: 132.3
Sample A Female 194.9
Sample B Female 157.0
Sample C Male 178.1
Sample D Male 132.3
Entorhinal cortex
nTPM: 142.2
Samples: 4

Max nTPM: 165.0
Min nTPM: 111.6
Sample A Female 140.3
Sample B Female 165.0
Sample C Male 151.7
Sample D Male 111.6
Ventral hippocampus
nTPM: 159.3
Samples: 4

Max nTPM: 205.9
Min nTPM: 132.5
Sample A Female 151.9
Sample B Female 132.5
Sample C Male 205.9
Sample D Male 146.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 138.0
Samples: 4

Max nTPM: 144.8
Min nTPM: 126.1
Sample A 140.9
Sample B 140.2
Sample C 144.8
Sample D 126.1
Hippocampal formation
nTPM: 141.2
Samples: 4

Max nTPM: 163.2
Min nTPM: 114.5
Sample A 163.2
Sample B 130.9
Sample C 114.5
Sample D 156.1

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.2
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 117.8
Samples: 4

Max nTPM: 131.4
Min nTPM: 103.8
Sample A 131.4
Sample A 121.2
Sample A 114.9
Sample B 103.8
Ventral hippocampus
nTPM: 126.2
Samples: 4

Max nTPM: 135.3
Min nTPM: 118.0
Sample A 129.3
Sample A 118.0
Sample A 135.3
Sample A 122.1

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