MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:136.6 nTPM
HPA Brain:156.1 nTPM
GTEx:136.6 nTPM
FANTOM5:101.0 Scaled Tags Per Million
Pig:114.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 156.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 122.6
2666 Male, age 74, left hemisphere 179.3
1870 Female, age 42, unknown 130.0
1833 Male, age 53, unknown 129.8
2586 Male, age 75, left hemisphere 129.0
2828 Female, age 72, unknown 125.7
1827 Male, age 72, unknown 125.1
1830 Male, age 51, unknown 112.9
2019 Male, age 18, unknown 101.2
2411 Female, age 72, unknown 98.3
2219 Male, age 76, both hemispheres 95.1
Dorsal raphe nucleus
nTPM: 119.5
2047 Male, age 72, unknown 134.2
1828 Male, age 53, unknown 124.0
2750 Male, age 76, both hemispheres 118.8
2298 Female, age 72, unknown 112.1
2016 Female, age 72, unknown 108.1
Inferior colliculus
nTPM: 110.7
2849 Male, age 72, unknown 144.5
1848 Female, age 42, unknown 111.5
1890 Male, age 53, unknown 95.0
2097 Female, age 72, unknown 91.7
Median raphe nucleus
nTPM: 156.1
2220 Male, age 76, midline 156.1
Periaquaductal grey, anterior
nTPM: 102.7
1795 Male, age 51, unknown 109.8
1947 Male, age 18, unknown 104.9
2502 Female, age 75, unknown 93.3
Periaquaductal grey, dorsal
nTPM: 119.1
2850 Male, age 76, both hemispheres 162.5
1840 Male, age 53, unknown 107.5
1831 Male, age 72, unknown 107.0
2464 Female, age 72, unknown 99.4
Periaquaductal grey, lateral
nTPM: 106.4
2140 Male, age 76, both hemispheres 114.3
2053 Male, age 18, unknown 105.2
2272 Male, age 74, both hemispheres 99.8
Pretectal area
nTPM: 112.9
1817 Female, age 42, unknown 132.3
1815 Male, age 53, unknown 131.0
2825 Male, age 18, unknown 129.0
1816 Male, age 51, unknown 124.8
2667 Female, age 75, unknown 117.3
2224 Female, age 72, unknown 111.7
2007 Male, age 72, unknown 110.2
1944 Female, age 72, unknown 108.2
2407 Male, age 75, both hemispheres 99.3
2273 Male, age 74, both hemispheres 90.2
2316 Male, age 76, right hemisphere 87.8
Red nucleus
nTPM: 119.9
1821 Female, age 72, unknown 135.7
2725 Female, age 75, unknown 132.6
2588 Male, age 74, left hemisphere 131.6
2584 Male, age 75, left hemisphere 124.8
2823 Male, age 76, right hemisphere 123.7
1954 Female, age 42, unknown 119.5
1865 Male, age 51, unknown 116.2
2503 Female, age 72, unknown 116.1
2769 Male, age 72, unknown 115.9
2227 Male, age 72, unknown 108.8
2785 Male, age 18, unknown 108.4
1904 Male, age 53, unknown 105.4
Substantia nigra
nTPM: 129.5
2699 Male, age 18, unknown 156.1
2665 Male, age 74, both hemispheres 153.5
1916 Female, age 42, unknown 150.0
1941 Male, age 53, unknown 141.6
1851 Male, age 51, unknown 126.1
2583 Male, age 75, right hemisphere 122.0
1889 Female, age 72, unknown 115.3
2241 Male, age 72, unknown 114.6
2590 Female, age 75, unknown 111.8
2409 Female, age 72, unknown 103.9
Superior colliculus
nTPM: 108.1
1839 Male, age 51, unknown 122.8
2664 Male, age 75, both hemispheres 117.6
2587 Male, age 74, left hemisphere 116.8
2668 Female, age 75, unknown 116.5
1796 Male, age 53, unknown 113.2
1913 Female, age 42, unknown 103.0
1895 Male, age 76, right hemisphere 101.0
2261 Male, age 18, unknown 99.5
1995 Male, age 72, unknown 97.5
2087 Female, age 72, unknown 93.6
Ventral tegmental area
nTPM: 117.1
1915 Female, age 42, unknown 133.5
2223 Female, age 72, unknown 133.5
2218 Male, age 76, both hemispheres 127.4
2021 Male, age 53, unknown 107.8
2410 Female, age 72, unknown 105.1
1942 Male, age 51, unknown 95.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 136.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 136.6
Samples: 183

Max nTPM: 259.9
Min nTPM: 80.9
Std nTPM: 29.2
Median nTPM: 131.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 259.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 237.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 233.9
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 233.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 217.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 212.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 209.2
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 208.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 201.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 194.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 191.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 101.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.0
FF:10158-103A5 76 years, female 101.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 114.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 114.7
Samples: 4

Max nTPM: 144.3
Min nTPM: 92.8
Sample A Female 144.3
Sample B Female 92.8
Sample C Male 126.5
Sample D Male 95.0
Midbrain
nTPM: 113.9
Samples: 4

Max nTPM: 167.3
Min nTPM: 78.2
Sample A Female 167.3
Sample B Female 103.8
Sample C Male 106.3
Sample D Male 78.2
Periaqueductal gray
nTPM: 94.9
Samples: 3

Max nTPM: 112.8
Min nTPM: 85.9
Sample B Female 85.9
Sample C Male 112.8
Sample D Male 86.1
Superior colliculi
nTPM: 107.8
Samples: 4

Max nTPM: 123.6
Min nTPM: 82.1
Sample A Female 123.6
Sample B Female 82.1
Sample C Male 120.6
Sample D Male 105.0

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