A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
892.1
nTPM
Monaco:
512.9
nTPM
Schmiedel:
104.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
892.1
HPA sample
nTPM
Memory B-cell nTPM: 892.1
Samples: 6
Max nTPM: 1834.2
Min nTPM: 386.0
P10809_1017
386.0
P10809_1025
779.5
P10809_1044
1834.2
P10809_1063
790.0
P10809_1092
786.0
P10809_1105
777.1
Naive B-cell nTPM: 860.8
Samples: 6
Max nTPM: 2302.7
Min nTPM: 297.7
P10809_1011
297.7
P10809_1029
569.6
P10809_1048
2302.7
P10809_1067
568.6
P10809_1091
740.9
P10809_1104
685.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
512.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 477.9
Samples: 4
Max nTPM: 718.8
Min nTPM: 297.3
RHH5310_R3677
537.6
RHH5218_R3590
357.8
RHH5247_R3619
718.8
RHH5276_R3648
297.3
Naive B-cell nTPM: 397.8
Samples: 4
Max nTPM: 511.9
Min nTPM: 251.1
RHH5308_R3675
473.7
RHH5216_R3588
511.9
RHH5245_R3617
251.1
RHH5274_R3646
354.6
Non-switched memory B-cell nTPM: 512.9
Samples: 4
Max nTPM: 716.4
Min nTPM: 303.6
RHH5309_R3676
562.3
RHH5217_R3589
469.5
RHH5246_R3618
716.4
RHH5275_R3647
303.6
Plasmablast nTPM: 237.5
Samples: 4
Max nTPM: 301.8
Min nTPM: 170.4
RHH5312_R3679
191.6
RHH5220_R3592
286.4
RHH5249_R3621
301.8
RHH5278_R3650
170.4
Switched memory B-cell nTPM: 487.7
Samples: 4
Max nTPM: 639.5
Min nTPM: 302.0
RHH5311_R3678
639.5
RHH5219_R3591
566.1
RHH5248_R3620
443.2
RHH5277_R3649
302.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
104.9
Schmiedel sample id
TPM
Naive B-cell TPM: 104.9
Samples: 91
Max TPM: 145.7
Min TPM: 63.4
B_CELL_NAIVE_1
145.7
B_CELL_NAIVE_2
130.9
B_CELL_NAIVE_3
130.5
B_CELL_NAIVE_4
123.8
B_CELL_NAIVE_5
122.1
B_CELL_NAIVE_6
121.5
B_CELL_NAIVE_7
120.3
B_CELL_NAIVE_8
118.7
B_CELL_NAIVE_9
118.3
B_CELL_NAIVE_10
117.7
B_CELL_NAIVE_11
117.0
B_CELL_NAIVE_12
116.9
B_CELL_NAIVE_13
116.5
B_CELL_NAIVE_14
116.0
B_CELL_NAIVE_15
114.9
B_CELL_NAIVE_16
114.8
B_CELL_NAIVE_17
113.7
B_CELL_NAIVE_18
113.6
B_CELL_NAIVE_19
113.6
B_CELL_NAIVE_20
112.5
B_CELL_NAIVE_21
112.3
B_CELL_NAIVE_22
112.0
B_CELL_NAIVE_23
111.0
B_CELL_NAIVE_24
111.0
B_CELL_NAIVE_25
110.8
B_CELL_NAIVE_26
110.6
B_CELL_NAIVE_27
110.1
B_CELL_NAIVE_28
110.1
B_CELL_NAIVE_29
109.4
B_CELL_NAIVE_30
108.8
B_CELL_NAIVE_31
108.7
B_CELL_NAIVE_32
108.7
B_CELL_NAIVE_33
108.5
B_CELL_NAIVE_34
108.3
B_CELL_NAIVE_35
108.1
B_CELL_NAIVE_36
107.9
B_CELL_NAIVE_37
107.8
B_CELL_NAIVE_38
107.8
B_CELL_NAIVE_39
107.7
B_CELL_NAIVE_40
107.6
B_CELL_NAIVE_41
107.4
B_CELL_NAIVE_42
106.9
B_CELL_NAIVE_43
106.4
B_CELL_NAIVE_44
105.9
B_CELL_NAIVE_45
105.8
B_CELL_NAIVE_46
105.4
B_CELL_NAIVE_47
104.9
B_CELL_NAIVE_48
103.8
B_CELL_NAIVE_49
103.8
B_CELL_NAIVE_50
103.7
B_CELL_NAIVE_51
103.6
B_CELL_NAIVE_52
103.4
B_CELL_NAIVE_53
103.1
B_CELL_NAIVE_54
103.1
B_CELL_NAIVE_55
102.6
B_CELL_NAIVE_56
101.9
B_CELL_NAIVE_57
101.2
B_CELL_NAIVE_58
100.8
B_CELL_NAIVE_59
100.5
B_CELL_NAIVE_60
100.5
B_CELL_NAIVE_61
100.1
B_CELL_NAIVE_62
100.0
B_CELL_NAIVE_63
99.4
B_CELL_NAIVE_64
99.2
B_CELL_NAIVE_65
99.2
B_CELL_NAIVE_66
98.8
B_CELL_NAIVE_67
98.6
B_CELL_NAIVE_68
98.5
B_CELL_NAIVE_69
98.3
B_CELL_NAIVE_70
98.1
B_CELL_NAIVE_71
97.7
B_CELL_NAIVE_72
97.5
B_CELL_NAIVE_73
97.2
B_CELL_NAIVE_74
96.5
B_CELL_NAIVE_75
96.3
B_CELL_NAIVE_76
95.1
B_CELL_NAIVE_77
94.9
B_CELL_NAIVE_78
94.5
B_CELL_NAIVE_79
94.2
B_CELL_NAIVE_80
93.4
B_CELL_NAIVE_81
93.0
B_CELL_NAIVE_82
92.3
B_CELL_NAIVE_83
90.9
B_CELL_NAIVE_84
90.2
B_CELL_NAIVE_85
89.0
B_CELL_NAIVE_86
88.9
B_CELL_NAIVE_87
86.7
B_CELL_NAIVE_88
82.2
B_CELL_NAIVE_89
81.6
B_CELL_NAIVE_90
80.8
B_CELL_NAIVE_91
63.4
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