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BETA
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  • PRR13
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:892.1 nTPM
Monaco:512.9 nTPM
Schmiedel:104.9 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

892.1
HPA sample nTPM
Memory B-cell
nTPM: 892.1
Samples: 6

Max nTPM: 1834.2
Min nTPM: 386.0
P10809_1017 386.0
P10809_1025 779.5
P10809_1044 1834.2
P10809_1063 790.0
P10809_1092 786.0
P10809_1105 777.1
Naive B-cell
nTPM: 860.8
Samples: 6

Max nTPM: 2302.7
Min nTPM: 297.7
P10809_1011 297.7
P10809_1029 569.6
P10809_1048 2302.7
P10809_1067 568.6
P10809_1091 740.9
P10809_1104 685.4

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

512.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 477.9
Samples: 4

Max nTPM: 718.8
Min nTPM: 297.3
RHH5310_R3677 537.6
RHH5218_R3590 357.8
RHH5247_R3619 718.8
RHH5276_R3648 297.3
Naive B-cell
nTPM: 397.8
Samples: 4

Max nTPM: 511.9
Min nTPM: 251.1
RHH5308_R3675 473.7
RHH5216_R3588 511.9
RHH5245_R3617 251.1
RHH5274_R3646 354.6
Non-switched memory B-cell
nTPM: 512.9
Samples: 4

Max nTPM: 716.4
Min nTPM: 303.6
RHH5309_R3676 562.3
RHH5217_R3589 469.5
RHH5246_R3618 716.4
RHH5275_R3647 303.6
Plasmablast
nTPM: 237.5
Samples: 4

Max nTPM: 301.8
Min nTPM: 170.4
RHH5312_R3679 191.6
RHH5220_R3592 286.4
RHH5249_R3621 301.8
RHH5278_R3650 170.4
Switched memory B-cell
nTPM: 487.7
Samples: 4

Max nTPM: 639.5
Min nTPM: 302.0
RHH5311_R3678 639.5
RHH5219_R3591 566.1
RHH5248_R3620 443.2
RHH5277_R3649 302.0

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

104.9
Schmiedel sample id TPM
Naive B-cell
TPM: 104.9
Samples: 91

Max TPM: 145.7
Min TPM: 63.4
B_CELL_NAIVE_1 145.7
B_CELL_NAIVE_2 130.9
B_CELL_NAIVE_3 130.5
B_CELL_NAIVE_4 123.8
B_CELL_NAIVE_5 122.1
B_CELL_NAIVE_6 121.5
B_CELL_NAIVE_7 120.3
B_CELL_NAIVE_8 118.7
B_CELL_NAIVE_9 118.3
B_CELL_NAIVE_10 117.7
B_CELL_NAIVE_11 117.0
B_CELL_NAIVE_12 116.9
B_CELL_NAIVE_13 116.5
B_CELL_NAIVE_14 116.0
B_CELL_NAIVE_15 114.9
B_CELL_NAIVE_16 114.8
B_CELL_NAIVE_17 113.7
B_CELL_NAIVE_18 113.6
B_CELL_NAIVE_19 113.6
B_CELL_NAIVE_20 112.5
B_CELL_NAIVE_21 112.3
B_CELL_NAIVE_22 112.0
B_CELL_NAIVE_23 111.0
B_CELL_NAIVE_24 111.0
B_CELL_NAIVE_25 110.8
B_CELL_NAIVE_26 110.6
B_CELL_NAIVE_27 110.1
B_CELL_NAIVE_28 110.1
B_CELL_NAIVE_29 109.4
B_CELL_NAIVE_30 108.8
B_CELL_NAIVE_31 108.7
B_CELL_NAIVE_32 108.7
B_CELL_NAIVE_33 108.5
B_CELL_NAIVE_34 108.3
B_CELL_NAIVE_35 108.1
B_CELL_NAIVE_36 107.9
B_CELL_NAIVE_37 107.8
B_CELL_NAIVE_38 107.8
B_CELL_NAIVE_39 107.7
B_CELL_NAIVE_40 107.6
B_CELL_NAIVE_41 107.4
B_CELL_NAIVE_42 106.9
B_CELL_NAIVE_43 106.4
B_CELL_NAIVE_44 105.9
B_CELL_NAIVE_45 105.8
B_CELL_NAIVE_46 105.4
B_CELL_NAIVE_47 104.9
B_CELL_NAIVE_48 103.8
B_CELL_NAIVE_49 103.8
B_CELL_NAIVE_50 103.7
B_CELL_NAIVE_51 103.6
B_CELL_NAIVE_52 103.4
B_CELL_NAIVE_53 103.1
B_CELL_NAIVE_54 103.1
B_CELL_NAIVE_55 102.6
B_CELL_NAIVE_56 101.9
B_CELL_NAIVE_57 101.2
B_CELL_NAIVE_58 100.8
B_CELL_NAIVE_59 100.5
B_CELL_NAIVE_60 100.5
B_CELL_NAIVE_61 100.1
B_CELL_NAIVE_62 100.0
B_CELL_NAIVE_63 99.4
B_CELL_NAIVE_64 99.2
B_CELL_NAIVE_65 99.2
B_CELL_NAIVE_66 98.8
B_CELL_NAIVE_67 98.6
B_CELL_NAIVE_68 98.5
B_CELL_NAIVE_69 98.3
B_CELL_NAIVE_70 98.1
B_CELL_NAIVE_71 97.7
B_CELL_NAIVE_72 97.5
B_CELL_NAIVE_73 97.2
B_CELL_NAIVE_74 96.5
B_CELL_NAIVE_75 96.3
B_CELL_NAIVE_76 95.1
B_CELL_NAIVE_77 94.9
B_CELL_NAIVE_78 94.5
B_CELL_NAIVE_79 94.2
B_CELL_NAIVE_80 93.4
B_CELL_NAIVE_81 93.0
B_CELL_NAIVE_82 92.3
B_CELL_NAIVE_83 90.9
B_CELL_NAIVE_84 90.2
B_CELL_NAIVE_85 89.0
B_CELL_NAIVE_86 88.9
B_CELL_NAIVE_87 86.7
B_CELL_NAIVE_88 82.2
B_CELL_NAIVE_89 81.6
B_CELL_NAIVE_90 80.8
B_CELL_NAIVE_91 63.4
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