A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1019.6
nTPM
Monaco:
647.1
nTPM
Schmiedel:
224.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1019.6
HPA sample
nTPM
Classical monocyte nTPM: 826.2
Samples: 6
Max nTPM: 1074.1
Min nTPM: 698.3
P10809_1003
761.7
P10809_1020
771.0
P10809_1039
1074.1
P10809_1058
698.3
P10809_1080
760.7
P10809_1107
891.2
Intermediate monocyte nTPM: 943.4
Samples: 6
Max nTPM: 1155.7
Min nTPM: 682.9
P10809_1004
682.9
P10809_1023
1131.7
P10809_1042
1059.1
P10809_1061
773.6
P10809_1081
857.5
P10809_1108
1155.7
Non-classical monocyte nTPM: 1019.6
Samples: 5
Max nTPM: 1335.6
Min nTPM: 690.9
P10809_1005
690.9
P10809_1053
1062.4
P10809_1072
1047.9
P10809_1082
961.2
P10809_1109
1335.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
647.1
Monaco sample
nTPM
Classical monocyte nTPM: 578.8
Samples: 4
Max nTPM: 650.9
Min nTPM: 492.0
RHH5313_R3680
521.6
RHH5221_R3593
492.0
RHH5250_R3622
650.9
RHH5279_R3651
650.6
Intermediate monocyte nTPM: 647.2
Samples: 4
Max nTPM: 802.5
Min nTPM: 509.0
RHH5314_R3681
731.5
RHH5222_R3594
545.6
RHH5251_R3623
509.0
RHH5280_R3652
802.5
Non-classical monocyte nTPM: 519.3
Samples: 4
Max nTPM: 729.0
Min nTPM: 404.9
RHH5315_R3682
490.2
RHH5223_R3595
452.9
RHH5252_R3624
404.9
RHH5281_R3653
729.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
224.3
Schmiedel sample id
TPM
Classical monocyte TPM: 159.5
Samples: 91
Max TPM: 188.0
Min TPM: 130.6
MONOCYTES_1
188.0
MONOCYTES_2
187.0
MONOCYTES_3
186.5
MONOCYTES_4
181.6
MONOCYTES_5
180.4
MONOCYTES_6
180.3
MONOCYTES_7
179.8
MONOCYTES_8
178.2
MONOCYTES_9
176.9
MONOCYTES_10
176.1
MONOCYTES_11
176.0
MONOCYTES_12
173.1
MONOCYTES_13
172.8
MONOCYTES_14
172.1
MONOCYTES_15
170.5
MONOCYTES_16
169.8
MONOCYTES_17
169.2
MONOCYTES_18
169.1
MONOCYTES_19
169.0
MONOCYTES_20
168.9
MONOCYTES_21
168.4
MONOCYTES_22
168.3
MONOCYTES_23
168.1
MONOCYTES_24
168.1
MONOCYTES_25
166.9
MONOCYTES_26
166.4
MONOCYTES_27
165.7
MONOCYTES_28
165.2
MONOCYTES_29
165.1
MONOCYTES_30
164.7
MONOCYTES_31
164.6
MONOCYTES_32
164.3
MONOCYTES_33
164.2
MONOCYTES_34
163.3
MONOCYTES_35
162.9
MONOCYTES_36
162.5
MONOCYTES_37
162.0
MONOCYTES_38
161.9
MONOCYTES_39
161.6
MONOCYTES_40
161.4
MONOCYTES_41
161.0
MONOCYTES_42
161.0
MONOCYTES_43
160.7
MONOCYTES_44
160.6
MONOCYTES_45
160.5
MONOCYTES_46
160.4
MONOCYTES_47
160.2
MONOCYTES_48
159.5
MONOCYTES_49
159.1
MONOCYTES_50
158.8
MONOCYTES_51
158.5
MONOCYTES_52
158.0
MONOCYTES_53
157.6
MONOCYTES_54
157.2
MONOCYTES_55
157.0
MONOCYTES_56
156.6
MONOCYTES_57
156.0
MONOCYTES_58
155.5
MONOCYTES_59
154.9
MONOCYTES_60
154.9
MONOCYTES_61
154.0
MONOCYTES_62
152.0
MONOCYTES_63
151.8
MONOCYTES_64
151.7
MONOCYTES_65
151.5
MONOCYTES_66
151.4
MONOCYTES_67
151.1
MONOCYTES_68
151.0
MONOCYTES_69
150.5
MONOCYTES_70
150.2
MONOCYTES_71
150.0
MONOCYTES_72
150.0
MONOCYTES_73
149.9
MONOCYTES_74
149.1
MONOCYTES_75
149.0
MONOCYTES_76
147.9
MONOCYTES_77
147.2
MONOCYTES_78
147.1
MONOCYTES_79
146.6
MONOCYTES_80
144.3
MONOCYTES_81
143.6
MONOCYTES_82
143.5
MONOCYTES_83
143.4
MONOCYTES_84
143.1
MONOCYTES_85
141.9
MONOCYTES_86
140.6
MONOCYTES_87
139.0
MONOCYTES_88
136.8
MONOCYTES_89
135.3
MONOCYTES_90
134.6
MONOCYTES_91
130.6
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Non-classical monocyte TPM: 224.3
Samples: 90
Max TPM: 272.9
Min TPM: 189.4
M2_1
272.9
M2_2
262.8
M2_3
262.7
M2_4
251.8
M2_5
251.3
M2_6
248.4
M2_7
247.1
M2_8
242.3
M2_9
241.1
M2_10
240.6
M2_11
239.7
M2_12
239.4
M2_13
239.1
M2_14
237.1
M2_15
236.7
M2_16
236.3
M2_17
235.8
M2_18
235.6
M2_19
235.6
M2_20
234.5
M2_21
233.9
M2_22
233.2
M2_23
233.2
M2_24
233.2
M2_25
232.3
M2_26
230.7
M2_27
230.5
M2_28
230.0
M2_29
229.2
M2_30
226.8
M2_31
226.1
M2_32
226.0
M2_33
225.9
M2_34
225.7
M2_35
225.1
M2_36
224.9
M2_37
224.7
M2_38
224.1
M2_39
224.0
M2_40
223.8
M2_41
223.8
M2_42
223.4
M2_43
223.4
M2_44
223.3
M2_45
223.2
M2_46
223.0
M2_47
222.7
M2_48
222.6
M2_49
222.3
M2_50
221.8
M2_51
221.2
M2_52
220.1
M2_53
219.8
M2_54
219.7
M2_55
219.4
M2_56
219.3
M2_57
219.2
M2_58
218.7
M2_59
218.4
M2_60
218.1
M2_61
217.9
M2_62
217.1
M2_63
217.1
M2_64
217.1
M2_65
216.9
M2_66
216.7
M2_67
215.9
M2_68
215.9
M2_69
215.3
M2_70
215.3
M2_71
215.0
M2_72
213.9
M2_73
213.3
M2_74
212.3
M2_75
212.2
M2_76
211.8
M2_77
211.6
M2_78
211.4
M2_79
209.9
M2_80
209.7
M2_81
209.6
M2_82
209.4
M2_83
208.9
M2_84
204.5
M2_85
203.9
M2_86
202.9
M2_87
201.0
M2_88
195.9
M2_89
195.3
M2_90
189.4
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