MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.7 nTPM
HPA Brain:140.4 nTPM
GTEx:88.7 nTPM
FANTOM5:6.7 Scaled Tags Per Million
Pig:98.5 nTPM
Mouse:74.4 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 140.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 128.6
2586 Male, age 75, left hemisphere 155.8
2666 Male, age 74, left hemisphere 152.4
1827 Male, age 72, unknown 141.7
2828 Female, age 72, unknown 131.1
2019 Male, age 18, unknown 125.9
2411 Female, age 72, unknown 121.1
2219 Male, age 76, both hemispheres 117.5
1833 Male, age 53, unknown 116.2
1830 Male, age 51, unknown 113.7
1870 Female, age 42, unknown 110.9
Dorsal raphe nucleus
nTPM: 116.3
2047 Male, age 72, unknown 126.5
2750 Male, age 76, both hemispheres 118.6
2298 Female, age 72, unknown 117.1
1828 Male, age 53, unknown 116.5
2016 Female, age 72, unknown 102.9
Inferior colliculus
nTPM: 122.3
2097 Female, age 72, unknown 130.4
2849 Male, age 72, unknown 125.0
1848 Female, age 42, unknown 118.4
1890 Male, age 53, unknown 115.3
Median raphe nucleus
nTPM: 131.6
2220 Male, age 76, midline 131.6
Periaquaductal grey, anterior
nTPM: 140.4
2502 Female, age 75, unknown 148.8
1795 Male, age 51, unknown 138.5
1947 Male, age 18, unknown 133.8
Periaquaductal grey, dorsal
nTPM: 113.6
1840 Male, age 53, unknown 122.5
2850 Male, age 76, both hemispheres 113.5
2464 Female, age 72, unknown 110.6
1831 Male, age 72, unknown 107.7
Periaquaductal grey, lateral
nTPM: 108.9
2053 Male, age 18, unknown 115.1
2140 Male, age 76, both hemispheres 114.1
2272 Male, age 74, both hemispheres 97.5
Pretectal area
nTPM: 128.1
1816 Male, age 51, unknown 154.6
2007 Male, age 72, unknown 151.4
1817 Female, age 42, unknown 147.9
1944 Female, age 72, unknown 147.8
1815 Male, age 53, unknown 130.5
2407 Male, age 75, both hemispheres 122.5
2667 Female, age 75, unknown 118.4
2825 Male, age 18, unknown 117.2
2224 Female, age 72, unknown 117.0
2316 Male, age 76, right hemisphere 112.4
2273 Male, age 74, both hemispheres 89.9
Red nucleus
nTPM: 110.8
2584 Male, age 75, left hemisphere 135.8
2785 Male, age 18, unknown 120.9
2588 Male, age 74, left hemisphere 116.8
2503 Female, age 72, unknown 111.0
2769 Male, age 72, unknown 110.6
1821 Female, age 72, unknown 109.8
1954 Female, age 42, unknown 106.9
2227 Male, age 72, unknown 106.9
2823 Male, age 76, right hemisphere 106.9
2725 Female, age 75, unknown 103.8
1865 Male, age 51, unknown 102.3
1904 Male, age 53, unknown 98.3
Substantia nigra
nTPM: 128.7
1916 Female, age 42, unknown 154.7
1941 Male, age 53, unknown 149.7
2665 Male, age 74, both hemispheres 146.2
1889 Female, age 72, unknown 132.8
1851 Male, age 51, unknown 128.9
2583 Male, age 75, right hemisphere 124.3
2590 Female, age 75, unknown 115.7
2699 Male, age 18, unknown 115.1
2241 Male, age 72, unknown 114.1
2409 Female, age 72, unknown 105.5
Superior colliculus
nTPM: 124.6
2668 Female, age 75, unknown 145.9
2087 Female, age 72, unknown 142.7
2664 Male, age 75, both hemispheres 142.6
1796 Male, age 53, unknown 139.6
2261 Male, age 18, unknown 135.6
1839 Male, age 51, unknown 122.2
1895 Male, age 76, right hemisphere 117.9
1995 Male, age 72, unknown 101.4
2587 Male, age 74, left hemisphere 100.8
1913 Female, age 42, unknown 97.4
Ventral tegmental area
nTPM: 123.3
2218 Male, age 76, both hemispheres 134.0
2410 Female, age 72, unknown 133.6
1915 Female, age 42, unknown 130.0
1942 Male, age 51, unknown 123.4
2223 Female, age 72, unknown 110.6
2021 Male, age 53, unknown 108.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 88.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.7
Samples: 183

Max nTPM: 173.4
Min nTPM: 57.5
Std nTPM: 17.8
Median nTPM: 86.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 173.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 136.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 131.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 127.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 124.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 123.5
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 123.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 121.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 121.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 120.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 120.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.7
FF:10158-103A5 76 years, female 6.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 98.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 87.9
Samples: 4

Max nTPM: 99.1
Min nTPM: 74.2
Sample A Female 99.0
Sample B Female 79.1
Sample C Male 99.1
Sample D Male 74.2
Midbrain
nTPM: 96.1
Samples: 4

Max nTPM: 102.6
Min nTPM: 84.7
Sample A Female 99.4
Sample B Female 84.7
Sample C Male 97.6
Sample D Male 102.6
Periaqueductal gray
nTPM: 81.0
Samples: 3

Max nTPM: 92.2
Min nTPM: 71.5
Sample B Female 79.3
Sample C Male 92.2
Sample D Male 71.5
Superior colliculi
nTPM: 98.5
Samples: 4

Max nTPM: 107.0
Min nTPM: 94.0
Sample A Female 107.0
Sample B Female 96.2
Sample C Male 96.6
Sample D Male 94.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 74.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.4
Samples: 4

Max nTPM: 79.6
Min nTPM: 69.8
Sample A Male 79.6
Sample B Male 70.9
Sample C Female 69.8
Sample D Female 77.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68076539 Antisense, RP_040923_02_E12, Mouse strain C57BL/6J (56 days, male) 0.2

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