MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.5 nTPM
HPA Brain:21.1 nTPM
GTEx:27.5 nTPM
FANTOM5:79.5 Scaled Tags Per Million
Pig:36.0 nTPM
Mouse:38.0 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 21.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.8
2019 Male, age 18, unknown 15.0
2411 Female, age 72, unknown 14.5
1870 Female, age 42, unknown 14.0
2666 Male, age 74, left hemisphere 13.6
2219 Male, age 76, both hemispheres 13.2
1827 Male, age 72, unknown 12.5
1833 Male, age 53, unknown 12.2
2586 Male, age 75, left hemisphere 11.6
1830 Male, age 51, unknown 11.5
2828 Female, age 72, unknown 9.3
Dorsal raphe nucleus
nTPM: 14.2
2298 Female, age 72, unknown 15.7
2750 Male, age 76, both hemispheres 15.3
2047 Male, age 72, unknown 14.2
1828 Male, age 53, unknown 13.3
2016 Female, age 72, unknown 12.5
Inferior colliculus
nTPM: 14.2
2097 Female, age 72, unknown 17.9
1890 Male, age 53, unknown 14.2
1848 Female, age 42, unknown 13.2
2849 Male, age 72, unknown 11.4
Median raphe nucleus
nTPM: 21.1
2220 Male, age 76, midline 21.1
Periaquaductal grey, anterior
nTPM: 14.2
1947 Male, age 18, unknown 15.5
2502 Female, age 75, unknown 13.8
1795 Male, age 51, unknown 13.3
Periaquaductal grey, dorsal
nTPM: 12.7
1840 Male, age 53, unknown 14.0
2850 Male, age 76, both hemispheres 13.0
1831 Male, age 72, unknown 12.5
2464 Female, age 72, unknown 11.2
Periaquaductal grey, lateral
nTPM: 11.5
2140 Male, age 76, both hemispheres 11.9
2053 Male, age 18, unknown 11.4
2272 Male, age 74, both hemispheres 11.2
Pretectal area
nTPM: 14.9
1816 Male, age 51, unknown 17.3
1817 Female, age 42, unknown 17.1
2224 Female, age 72, unknown 16.6
1944 Female, age 72, unknown 16.4
1815 Male, age 53, unknown 15.7
2007 Male, age 72, unknown 15.6
2273 Male, age 74, both hemispheres 15.5
2667 Female, age 75, unknown 14.4
2316 Male, age 76, right hemisphere 13.0
2825 Male, age 18, unknown 12.1
2407 Male, age 75, both hemispheres 10.0
Red nucleus
nTPM: 12.6
1821 Female, age 72, unknown 16.7
2785 Male, age 18, unknown 13.8
2503 Female, age 72, unknown 13.4
2725 Female, age 75, unknown 13.1
1865 Male, age 51, unknown 12.9
2823 Male, age 76, right hemisphere 12.7
1904 Male, age 53, unknown 11.9
2227 Male, age 72, unknown 11.7
2769 Male, age 72, unknown 11.7
2588 Male, age 74, left hemisphere 11.4
1954 Female, age 42, unknown 11.2
2584 Male, age 75, left hemisphere 10.4
Substantia nigra
nTPM: 15.7
2241 Male, age 72, unknown 22.1
1851 Male, age 51, unknown 17.7
1916 Female, age 42, unknown 17.4
2665 Male, age 74, both hemispheres 17.4
1889 Female, age 72, unknown 16.8
1941 Male, age 53, unknown 16.5
2590 Female, age 75, unknown 14.0
2699 Male, age 18, unknown 12.2
2583 Male, age 75, right hemisphere 11.6
2409 Female, age 72, unknown 11.2
Superior colliculus
nTPM: 12.9
2087 Female, age 72, unknown 14.5
2668 Female, age 75, unknown 14.1
1913 Female, age 42, unknown 14.0
2261 Male, age 18, unknown 13.8
1796 Male, age 53, unknown 13.3
1895 Male, age 76, right hemisphere 12.7
2587 Male, age 74, left hemisphere 12.4
1995 Male, age 72, unknown 11.9
1839 Male, age 51, unknown 11.0
2664 Male, age 75, both hemispheres 10.9
Ventral tegmental area
nTPM: 14.5
1915 Female, age 42, unknown 15.9
2223 Female, age 72, unknown 15.7
2218 Male, age 76, both hemispheres 14.3
2410 Female, age 72, unknown 14.3
1942 Male, age 51, unknown 14.0
2021 Male, age 53, unknown 12.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.5
Samples: 183

Max nTPM: 48.7
Min nTPM: 14.8
Std nTPM: 6.7
Median nTPM: 26.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 48.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 46.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 46.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 46.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 44.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 43.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 43.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 43.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 42.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 41.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 41.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 79.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.5
FF:10158-103A5 76 years, female 79.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.0
Samples: 4

Max nTPM: 36.9
Min nTPM: 22.8
Sample A Female 34.6
Sample B Female 29.6
Sample C Male 36.9
Sample D Male 22.8
Midbrain
nTPM: 31.2
Samples: 4

Max nTPM: 33.7
Min nTPM: 26.6
Sample A Female 32.6
Sample B Female 33.7
Sample C Male 32.0
Sample D Male 26.6
Periaqueductal gray
nTPM: 24.2
Samples: 3

Max nTPM: 32.7
Min nTPM: 18.5
Sample B Female 32.7
Sample C Male 21.3
Sample D Male 18.5
Superior colliculi
nTPM: 36.0
Samples: 4

Max nTPM: 42.5
Min nTPM: 30.2
Sample A Female 34.3
Sample B Female 37.1
Sample C Male 42.5
Sample D Male 30.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.0
Samples: 4

Max nTPM: 43.0
Min nTPM: 34.9
Sample A Male 43.0
Sample B Male 39.3
Sample C Female 34.9
Sample D Female 34.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70474881 Antisense, RP_050623_01_C05, Mouse strain C57BL/6J (56 days, male) 0.0

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