MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.0 nTPM
HPA Brain:40.6 nTPM
GTEx:74.0 nTPM
FANTOM5:69.1 Scaled Tags Per Million
Mouse:19.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.4
1827 Male, age 72, unknown 41.6
2019 Male, age 18, unknown 40.2
2586 Male, age 75, left hemisphere 37.0
2666 Male, age 74, left hemisphere 35.1
2828 Female, age 72, unknown 35.1
2411 Female, age 72, unknown 34.4
1870 Female, age 42, unknown 31.4
1833 Male, age 53, unknown 27.2
2219 Male, age 76, both hemispheres 27.1
1830 Male, age 51, unknown 25.3
Dorsal raphe nucleus
nTPM: 35.8
2298 Female, age 72, unknown 48.2
2047 Male, age 72, unknown 36.2
1828 Male, age 53, unknown 33.8
2750 Male, age 76, both hemispheres 32.7
2016 Female, age 72, unknown 28.2
Inferior colliculus
nTPM: 31.4
2097 Female, age 72, unknown 36.8
1890 Male, age 53, unknown 32.2
1848 Female, age 42, unknown 28.4
2849 Male, age 72, unknown 28.2
Median raphe nucleus
nTPM: 34.1
2220 Male, age 76, midline 34.1
Periaquaductal grey, anterior
nTPM: 40.6
1795 Male, age 51, unknown 45.0
1947 Male, age 18, unknown 40.0
2502 Female, age 75, unknown 36.8
Periaquaductal grey, dorsal
nTPM: 31.3
1840 Male, age 53, unknown 35.9
1831 Male, age 72, unknown 32.8
2850 Male, age 76, both hemispheres 29.0
2464 Female, age 72, unknown 27.3
Periaquaductal grey, lateral
nTPM: 32.3
2272 Male, age 74, both hemispheres 37.5
2053 Male, age 18, unknown 31.1
2140 Male, age 76, both hemispheres 28.3
Pretectal area
nTPM: 37.6
1816 Male, age 51, unknown 52.0
2007 Male, age 72, unknown 47.0
1944 Female, age 72, unknown 43.8
1817 Female, age 42, unknown 40.1
2667 Female, age 75, unknown 38.7
2273 Male, age 74, both hemispheres 36.5
1815 Male, age 53, unknown 35.5
2224 Female, age 72, unknown 34.2
2825 Male, age 18, unknown 31.4
2316 Male, age 76, right hemisphere 27.0
2407 Male, age 75, both hemispheres 27.0
Red nucleus
nTPM: 30.7
1821 Female, age 72, unknown 35.9
2785 Male, age 18, unknown 35.2
2725 Female, age 75, unknown 35.0
2584 Male, age 75, left hemisphere 34.9
2503 Female, age 72, unknown 30.7
1954 Female, age 42, unknown 29.2
2588 Male, age 74, left hemisphere 29.0
1904 Male, age 53, unknown 28.5
2769 Male, age 72, unknown 28.4
2823 Male, age 76, right hemisphere 27.7
2227 Male, age 72, unknown 26.9
1865 Male, age 51, unknown 26.6
Substantia nigra
nTPM: 38.4
1916 Female, age 42, unknown 54.7
1851 Male, age 51, unknown 43.9
1889 Female, age 72, unknown 40.7
2665 Male, age 74, both hemispheres 40.0
2409 Female, age 72, unknown 37.9
2590 Female, age 75, unknown 37.4
1941 Male, age 53, unknown 34.4
2583 Male, age 75, right hemisphere 34.3
2241 Male, age 72, unknown 32.7
2699 Male, age 18, unknown 28.5
Superior colliculus
nTPM: 33.2
1796 Male, age 53, unknown 45.1
2087 Female, age 72, unknown 39.0
2261 Male, age 18, unknown 37.9
2664 Male, age 75, both hemispheres 33.4
2668 Female, age 75, unknown 30.3
2587 Male, age 74, left hemisphere 30.0
1895 Male, age 76, right hemisphere 29.7
1995 Male, age 72, unknown 29.5
1913 Female, age 42, unknown 29.0
1839 Male, age 51, unknown 28.5
Ventral tegmental area
nTPM: 34.3
1915 Female, age 42, unknown 42.8
2410 Female, age 72, unknown 34.2
2218 Male, age 76, both hemispheres 33.5
1942 Male, age 51, unknown 32.1
2021 Male, age 53, unknown 32.1
2223 Female, age 72, unknown 30.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 74.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.0
Samples: 183

Max nTPM: 144.1
Min nTPM: 33.6
Std nTPM: 20.2
Median nTPM: 70.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 144.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 131.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 127.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 125.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 124.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 123.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 119.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 119.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 119.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 119.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 117.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.1
FF:10158-103A5 76 years, female 69.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.8
Samples: 4

Max nTPM: 24.6
Min nTPM: 14.0
Sample A Male 24.6
Sample B Male 20.3
Sample C Female 14.0
Sample D Female 20.3

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