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  • ARL2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:234.0 nTPM
HPA Brain:147.9 nTPM
GTEx:234.0 nTPM
FANTOM5:80.5 Scaled Tags Per Million
Pig:170.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 135.3
1981 Female, age 72, midline 174.0
2565 Male, age 75, midline 159.1
2194 Female, age 79, both hemispheres 125.2
2816 Male, age 47, midline 124.7
2048 Male, age 55, midline 93.6
Cervical spinal cord, dorsal horn
nTPM: 145.2
2296 Male, age 66, both hemispheres 192.4
2173 Female, age 72, unknown 186.3
2069 Male, age 47, both hemispheres 143.6
1877 Male, age 55, unknown 134.3
2297 Male, age 75, both hemispheres 121.5
2721 Male, age 90, both hemispheres 93.3
Cervical spinal cord, ventral horn
nTPM: 147.9
2480 Male, age 75, both hemispheres 179.8
2098 Female, age 72, unknown 157.0
2809 Male, age 90, both hemispheres 151.4
2295 Male, age 66, both hemispheres 138.0
2820 Female, age 79, both hemispheres 133.7
2068 Male, age 55, unknown 127.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

234.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 234.0
Samples: 204

Max nTPM: 487.4
Min nTPM: 104.2
Std nTPM: 63.7
Median nTPM: 226.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 487.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 476.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 465.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 447.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 385.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 376.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 365.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 344.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 343.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 341.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 337.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 337.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 337.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 334.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 334.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 334.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 331.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 329.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 320.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 318.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 311.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 311.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 310.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 310.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 310.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 305.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 301.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 295.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 293.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 293.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 293.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 292.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 288.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 288.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 285.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 283.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 283.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 283.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 282.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 281.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 276.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 275.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 275.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 275.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 270.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 268.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 267.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 266.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 264.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 264.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 264.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 263.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 263.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 263.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 262.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 262.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 260.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 258.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 257.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 256.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 254.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 254.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 253.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 252.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 251.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 250.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 250.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 249.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 246.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 245.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 244.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 244.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 243.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 243.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 242.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 242.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 241.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 240.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 239.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 238.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 238.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 237.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 236.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 236.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 236.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 234.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 234.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 234.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 233.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 231.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 231.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 231.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 230.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 230.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 229.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 228.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 228.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 227.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 227.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 227.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 226.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 226.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 226.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 226.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 225.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 224.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 224.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 224.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 224.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 223.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 222.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 222.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 222.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 222.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 221.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 221.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 221.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 220.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 220.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 220.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 219.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 216.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 215.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 215.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 214.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 214.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 213.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 212.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 211.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 211.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 211.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 210.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 210.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 210.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 208.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 207.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 206.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 206.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 206.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 204.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 204.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 201.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 201.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 200.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 199.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 198.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 197.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 196.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 196.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 195.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 194.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 192.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 192.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 191.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 191.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 191.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 190.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 189.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 189.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 189.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 188.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 187.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 185.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 184.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 183.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 181.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 181.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 180.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 180.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 179.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 178.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 178.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 175.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 175.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 175.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 170.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 170.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 167.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 165.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 163.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 161.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 161.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 159.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 159.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 158.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 156.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 155.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 154.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 150.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 150.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 149.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 145.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 145.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 143.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 142.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 141.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 140.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 139.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 137.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 123.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 121.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 117.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 113.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 104.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

80.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 80.5
FF:10181-103D1 60 years, female 96.5
FF:10159-103A6 76 years, female 64.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

170.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 166.8
Samples: 4

Max nTPM: 175.2
Min nTPM: 156.2
Sample A Female 169.4
Sample B Female 156.2
Sample C Male 166.3
Sample D Male 175.2
Ventral spinal cord
nTPM: 170.9
Samples: 4

Max nTPM: 193.0
Min nTPM: 150.0
Sample A Female 150.0
Sample B Female 173.9
Sample C Male 166.5
Sample D Male 193.0

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