A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.9
nTPM
Monaco:
14.8
nTPM
Schmiedel:
41.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.9
HPA sample
nTPM
Memory B-cell nTPM: 4.7
Samples: 6
Max nTPM: 7.0
Min nTPM: 0.9
P10809_1017
5.0
P10809_1025
0.9
P10809_1044
7.0
P10809_1063
4.0
P10809_1092
6.4
P10809_1105
5.1
Naive B-cell nTPM: 5.8
Samples: 6
Max nTPM: 8.1
Min nTPM: 3.2
P10809_1011
6.3
P10809_1029
3.2
P10809_1048
6.1
P10809_1067
8.1
P10809_1091
6.6
P10809_1104
4.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 8.5
Samples: 4
Max nTPM: 15.0
Min nTPM: 2.3
RHH5310_R3677
6.6
RHH5218_R3590
15.0
RHH5247_R3619
2.3
RHH5276_R3648
9.9
Naive B-cell nTPM: 14.8
Samples: 4
Max nTPM: 19.5
Min nTPM: 9.3
RHH5308_R3675
9.3
RHH5216_R3588
14.6
RHH5245_R3617
15.7
RHH5274_R3646
19.5
Non-switched memory B-cell nTPM: 11.0
Samples: 4
Max nTPM: 15.7
Min nTPM: 6.0
RHH5309_R3676
6.0
RHH5217_R3589
15.7
RHH5246_R3618
12.4
RHH5275_R3647
9.8
Plasmablast nTPM: 6.9
Samples: 4
Max nTPM: 9.4
Min nTPM: 4.9
RHH5312_R3679
9.4
RHH5220_R3592
4.9
RHH5249_R3621
5.7
RHH5278_R3650
7.4
Switched memory B-cell nTPM: 11.1
Samples: 4
Max nTPM: 15.2
Min nTPM: 8.1
RHH5311_R3678
8.1
RHH5219_R3591
15.2
RHH5248_R3620
11.9
RHH5277_R3649
9.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.0
Schmiedel sample id
TPM
Naive B-cell TPM: 41.0
Samples: 91
Max TPM: 60.0
Min TPM: 29.0
B_CELL_NAIVE_1
60.0
B_CELL_NAIVE_2
58.1
B_CELL_NAIVE_3
57.4
B_CELL_NAIVE_4
53.4
B_CELL_NAIVE_5
52.8
B_CELL_NAIVE_6
52.0
B_CELL_NAIVE_7
51.3
B_CELL_NAIVE_8
50.7
B_CELL_NAIVE_9
49.9
B_CELL_NAIVE_10
48.7
B_CELL_NAIVE_11
48.1
B_CELL_NAIVE_12
47.7
B_CELL_NAIVE_13
47.6
B_CELL_NAIVE_14
46.8
B_CELL_NAIVE_15
46.5
B_CELL_NAIVE_16
46.4
B_CELL_NAIVE_17
46.3
B_CELL_NAIVE_18
46.2
B_CELL_NAIVE_19
46.0
B_CELL_NAIVE_20
45.9
B_CELL_NAIVE_21
45.8
B_CELL_NAIVE_22
45.5
B_CELL_NAIVE_23
45.4
B_CELL_NAIVE_24
45.3
B_CELL_NAIVE_25
45.0
B_CELL_NAIVE_26
44.8
B_CELL_NAIVE_27
44.7
B_CELL_NAIVE_28
44.3
B_CELL_NAIVE_29
43.8
B_CELL_NAIVE_30
43.6
B_CELL_NAIVE_31
43.5
B_CELL_NAIVE_32
43.2
B_CELL_NAIVE_33
42.6
B_CELL_NAIVE_34
42.3
B_CELL_NAIVE_35
42.1
B_CELL_NAIVE_36
42.0
B_CELL_NAIVE_37
41.7
B_CELL_NAIVE_38
41.5
B_CELL_NAIVE_39
41.4
B_CELL_NAIVE_40
41.3
B_CELL_NAIVE_41
41.1
B_CELL_NAIVE_42
40.5
B_CELL_NAIVE_43
40.3
B_CELL_NAIVE_44
40.3
B_CELL_NAIVE_45
40.2
B_CELL_NAIVE_46
40.1
B_CELL_NAIVE_47
39.9
B_CELL_NAIVE_48
39.6
B_CELL_NAIVE_49
39.5
B_CELL_NAIVE_50
39.5
B_CELL_NAIVE_51
39.4
B_CELL_NAIVE_52
39.3
B_CELL_NAIVE_53
39.2
B_CELL_NAIVE_54
39.2
B_CELL_NAIVE_55
38.8
B_CELL_NAIVE_56
38.5
B_CELL_NAIVE_57
38.3
B_CELL_NAIVE_58
38.2
B_CELL_NAIVE_59
38.1
B_CELL_NAIVE_60
38.0
B_CELL_NAIVE_61
38.0
B_CELL_NAIVE_62
38.0
B_CELL_NAIVE_63
37.9
B_CELL_NAIVE_64
37.8
B_CELL_NAIVE_65
37.6
B_CELL_NAIVE_66
37.3
B_CELL_NAIVE_67
37.3
B_CELL_NAIVE_68
37.1
B_CELL_NAIVE_69
36.9
B_CELL_NAIVE_70
36.8
B_CELL_NAIVE_71
36.2
B_CELL_NAIVE_72
36.2
B_CELL_NAIVE_73
36.0
B_CELL_NAIVE_74
35.9
B_CELL_NAIVE_75
35.8
B_CELL_NAIVE_76
35.7
B_CELL_NAIVE_77
35.1
B_CELL_NAIVE_78
34.8
B_CELL_NAIVE_79
34.3
B_CELL_NAIVE_80
33.7
B_CELL_NAIVE_81
32.9
B_CELL_NAIVE_82
32.0
B_CELL_NAIVE_83
31.8
B_CELL_NAIVE_84
31.7
B_CELL_NAIVE_85
31.6
B_CELL_NAIVE_86
30.9
B_CELL_NAIVE_87
30.3
B_CELL_NAIVE_88
30.1
B_CELL_NAIVE_89
30.0
B_CELL_NAIVE_90
29.9
B_CELL_NAIVE_91
29.0
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The Human Protein Atlas project is funded
