A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.9
nTPM
Monaco:
18.9
nTPM
Schmiedel:
21.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.9
HPA sample
nTPM
Classical monocyte nTPM: 4.8
Samples: 6
Max nTPM: 7.4
Min nTPM: 3.1
P10809_1003
7.4
P10809_1020
3.2
P10809_1039
5.0
P10809_1058
6.2
P10809_1080
3.1
P10809_1107
4.0
Intermediate monocyte nTPM: 6.2
Samples: 6
Max nTPM: 11.0
Min nTPM: 3.0
P10809_1004
6.1
P10809_1023
3.0
P10809_1042
8.1
P10809_1061
11.0
P10809_1081
4.5
P10809_1108
4.3
Non-classical monocyte nTPM: 7.9
Samples: 5
Max nTPM: 19.5
Min nTPM: 3.0
P10809_1005
4.6
P10809_1053
7.1
P10809_1072
19.5
P10809_1082
5.3
P10809_1109
3.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.9
Monaco sample
nTPM
Classical monocyte nTPM: 16.1
Samples: 4
Max nTPM: 17.9
Min nTPM: 14.6
RHH5313_R3680
17.9
RHH5221_R3593
15.6
RHH5250_R3622
16.1
RHH5279_R3651
14.6
Intermediate monocyte nTPM: 16.8
Samples: 4
Max nTPM: 21.7
Min nTPM: 9.7
RHH5314_R3681
9.7
RHH5222_R3594
21.6
RHH5251_R3623
14.3
RHH5280_R3652
21.7
Non-classical monocyte nTPM: 18.9
Samples: 4
Max nTPM: 32.1
Min nTPM: 10.3
RHH5315_R3682
10.3
RHH5223_R3595
32.1
RHH5252_R3624
20.8
RHH5281_R3653
12.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.3
Schmiedel sample id
TPM
Classical monocyte TPM: 19.2
Samples: 91
Max TPM: 27.9
Min TPM: 13.1
MONOCYTES_1
27.9
MONOCYTES_2
27.6
MONOCYTES_3
27.3
MONOCYTES_4
25.6
MONOCYTES_5
24.6
MONOCYTES_6
23.7
MONOCYTES_7
23.1
MONOCYTES_8
23.1
MONOCYTES_9
22.9
MONOCYTES_10
22.2
MONOCYTES_11
21.9
MONOCYTES_12
21.8
MONOCYTES_13
21.8
MONOCYTES_14
21.7
MONOCYTES_15
21.6
MONOCYTES_16
21.6
MONOCYTES_17
21.4
MONOCYTES_18
21.0
MONOCYTES_19
21.0
MONOCYTES_20
21.0
MONOCYTES_21
20.9
MONOCYTES_22
20.7
MONOCYTES_23
20.7
MONOCYTES_24
20.7
MONOCYTES_25
20.7
MONOCYTES_26
20.4
MONOCYTES_27
20.3
MONOCYTES_28
20.2
MONOCYTES_29
20.2
MONOCYTES_30
20.2
MONOCYTES_31
20.1
MONOCYTES_32
20.0
MONOCYTES_33
20.0
MONOCYTES_34
19.9
MONOCYTES_35
19.8
MONOCYTES_36
19.8
MONOCYTES_37
19.6
MONOCYTES_38
19.6
MONOCYTES_39
19.6
MONOCYTES_40
19.5
MONOCYTES_41
19.5
MONOCYTES_42
19.3
MONOCYTES_43
19.2
MONOCYTES_44
19.2
MONOCYTES_45
19.1
MONOCYTES_46
19.0
MONOCYTES_47
18.9
MONOCYTES_48
18.9
MONOCYTES_49
18.9
MONOCYTES_50
18.8
MONOCYTES_51
18.8
MONOCYTES_52
18.8
MONOCYTES_53
18.6
MONOCYTES_54
18.5
MONOCYTES_55
18.4
MONOCYTES_56
18.4
MONOCYTES_57
18.4
MONOCYTES_58
18.3
MONOCYTES_59
18.3
MONOCYTES_60
18.2
MONOCYTES_61
18.2
MONOCYTES_62
18.0
MONOCYTES_63
17.7
MONOCYTES_64
17.6
MONOCYTES_65
17.6
MONOCYTES_66
17.6
MONOCYTES_67
17.6
MONOCYTES_68
17.5
MONOCYTES_69
17.4
MONOCYTES_70
17.3
MONOCYTES_71
17.3
MONOCYTES_72
17.0
MONOCYTES_73
16.9
MONOCYTES_74
16.8
MONOCYTES_75
16.7
MONOCYTES_76
16.7
MONOCYTES_77
16.7
MONOCYTES_78
16.4
MONOCYTES_79
16.4
MONOCYTES_80
16.3
MONOCYTES_81
16.3
MONOCYTES_82
16.2
MONOCYTES_83
15.8
MONOCYTES_84
15.7
MONOCYTES_85
15.6
MONOCYTES_86
14.9
MONOCYTES_87
14.5
MONOCYTES_88
14.5
MONOCYTES_89
14.3
MONOCYTES_90
13.3
MONOCYTES_91
13.1
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Non-classical monocyte TPM: 21.3
Samples: 90
Max TPM: 32.2
Min TPM: 14.0
M2_1
32.2
M2_2
30.0
M2_3
29.6
M2_4
28.0
M2_5
26.9
M2_6
26.8
M2_7
26.5
M2_8
26.5
M2_9
26.4
M2_10
26.2
M2_11
25.9
M2_12
25.7
M2_13
25.6
M2_14
25.6
M2_15
25.3
M2_16
24.9
M2_17
24.8
M2_18
24.7
M2_19
24.6
M2_20
24.5
M2_21
24.2
M2_22
23.7
M2_23
23.6
M2_24
23.3
M2_25
23.3
M2_26
23.0
M2_27
22.9
M2_28
22.6
M2_29
22.6
M2_30
22.6
M2_31
22.4
M2_32
22.4
M2_33
22.3
M2_34
22.0
M2_35
21.9
M2_36
21.9
M2_37
21.8
M2_38
21.8
M2_39
21.4
M2_40
21.3
M2_41
21.2
M2_42
21.2
M2_43
21.1
M2_44
21.1
M2_45
20.9
M2_46
20.8
M2_47
20.8
M2_48
20.6
M2_49
20.6
M2_50
20.5
M2_51
20.5
M2_52
20.4
M2_53
20.3
M2_54
20.3
M2_55
20.2
M2_56
20.2
M2_57
20.1
M2_58
19.8
M2_59
19.8
M2_60
19.6
M2_61
19.6
M2_62
19.5
M2_63
19.5
M2_64
19.3
M2_65
19.1
M2_66
19.1
M2_67
19.1
M2_68
18.5
M2_69
18.4
M2_70
18.3
M2_71
18.3
M2_72
18.2
M2_73
18.1
M2_74
18.1
M2_75
17.7
M2_76
17.6
M2_77
17.3
M2_78
17.3
M2_79
17.1
M2_80
17.1
M2_81
16.7
M2_82
16.4
M2_83
15.8
M2_84
15.7
M2_85
15.6
M2_86
15.3
M2_87
15.3
M2_88
14.9
M2_89
14.4
M2_90
14.0
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