On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
124.2
nTPM
HPA Brain:
137.2
nTPM
GTEx:
124.2
nTPM
FANTOM5:
117.6
Scaled Tags Per Million
Macaque:
105.3
nTPM
Mouse:
399.5
nTPM
Pig:
318.3
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
137.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 107.0
2019
Male, age 18, unknown
151.5
1827
Male, age 72, unknown
125.3
2411
Female, age 72, unknown
124.2
2219
Male, age 76, both hemispheres
105.5
1870
Female, age 42, unknown
97.6
2666
Male, age 74, left hemisphere
97.5
2828
Female, age 72, unknown
95.9
1833
Male, age 53, unknown
93.4
2586
Male, age 75, left hemisphere
92.8
1830
Male, age 51, unknown
86.2
Dorsal raphe nucleus nTPM: 123.0
2298
Female, age 72, unknown
150.2
2047
Male, age 72, unknown
130.5
1828
Male, age 53, unknown
129.1
2750
Male, age 76, both hemispheres
117.9
2016
Female, age 72, unknown
87.1
Inferior colliculus nTPM: 115.9
2097
Female, age 72, unknown
149.1
1890
Male, age 53, unknown
125.2
1848
Female, age 42, unknown
103.5
2849
Male, age 72, unknown
85.7
Median raphe nucleus nTPM: 135.9
2220
Male, age 76, midline
135.9
Periaquaductal grey, anterior nTPM: 111.4
1947
Male, age 18, unknown
118.3
1795
Male, age 51, unknown
113.0
2502
Female, age 75, unknown
103.0
Periaquaductal grey, dorsal nTPM: 97.6
1831
Male, age 72, unknown
106.8
2850
Male, age 76, both hemispheres
101.1
1840
Male, age 53, unknown
92.2
2464
Female, age 72, unknown
90.1
Periaquaductal grey, lateral nTPM: 100.6
2272
Male, age 74, both hemispheres
124.2
2140
Male, age 76, both hemispheres
89.5
2053
Male, age 18, unknown
87.9
Pretectal area nTPM: 136.2
1816
Male, age 51, unknown
180.5
1817
Female, age 42, unknown
180.4
2007
Male, age 72, unknown
175.4
1944
Female, age 72, unknown
168.1
1815
Male, age 53, unknown
141.1
2667
Female, age 75, unknown
134.0
2273
Male, age 74, both hemispheres
124.4
2224
Female, age 72, unknown
117.0
2407
Male, age 75, both hemispheres
97.1
2825
Male, age 18, unknown
90.8
2316
Male, age 76, right hemisphere
90.0
Red nucleus nTPM: 121.2
1821
Female, age 72, unknown
171.9
2785
Male, age 18, unknown
136.2
2725
Female, age 75, unknown
133.3
1954
Female, age 42, unknown
132.0
2823
Male, age 76, right hemisphere
123.3
1904
Male, age 53, unknown
119.8
1865
Male, age 51, unknown
119.2
2503
Female, age 72, unknown
107.5
2769
Male, age 72, unknown
106.0
2227
Male, age 72, unknown
105.9
2584
Male, age 75, left hemisphere
99.7
2588
Male, age 74, left hemisphere
99.3
Substantia nigra nTPM: 137.2
1916
Female, age 42, unknown
179.5
1889
Female, age 72, unknown
166.4
2241
Male, age 72, unknown
159.7
1941
Male, age 53, unknown
150.9
1851
Male, age 51, unknown
147.3
2409
Female, age 72, unknown
129.9
2590
Female, age 75, unknown
121.6
2699
Male, age 18, unknown
109.5
2665
Male, age 74, both hemispheres
105.2
2583
Male, age 75, right hemisphere
102.0
Superior colliculus nTPM: 105.0
2087
Female, age 72, unknown
142.8
2261
Male, age 18, unknown
120.1
1796
Male, age 53, unknown
114.9
2587
Male, age 74, left hemisphere
110.0
2668
Female, age 75, unknown
109.5
1895
Male, age 76, right hemisphere
105.5
1839
Male, age 51, unknown
93.7
1913
Female, age 42, unknown
89.8
2664
Male, age 75, both hemispheres
84.9
1995
Male, age 72, unknown
78.8
Ventral tegmental area nTPM: 124.3
2410
Female, age 72, unknown
157.5
2218
Male, age 76, both hemispheres
145.8
1915
Female, age 42, unknown
137.1
1942
Male, age 51, unknown
108.8
2223
Female, age 72, unknown
104.0
2021
Male, age 53, unknown
92.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
124.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 124.2
Samples: 183
Max nTPM: 310.8
Min nTPM: 53.9
Std nTPM: 44.4
Median nTPM: 110.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
310.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
286.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
252.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
248.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
238.1
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
235.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
229.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
219.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
210.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
207.5
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
204.2
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
203.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
200.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
197.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
195.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
192.6
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
189.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
182.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
181.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
180.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
179.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
178.6
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
178.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
175.9
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
173.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
172.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
171.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
171.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
170.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
168.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
166.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
165.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
165.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
163.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
163.4
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
160.5
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
160.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
158.9
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
158.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
157.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
157.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
155.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
152.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
147.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
145.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
144.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
142.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
142.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
141.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
141.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
140.3
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
138.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
138.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
137.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
137.0
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
136.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
135.6
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
134.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
133.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
133.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
130.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
130.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
130.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
129.1
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
126.0
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
125.8
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
125.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
124.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
124.0
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
123.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
123.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
123.4
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
122.6
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
121.2
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
120.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
117.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
117.8
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
117.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
117.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
117.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
117.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
116.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
115.9
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
115.9
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
114.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
114.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
114.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
114.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
113.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
112.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
111.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
110.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
110.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
110.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
110.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
109.9
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
109.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
109.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
109.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
108.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
108.5
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
107.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
106.9
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
106.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
106.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
105.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
105.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
104.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
104.1
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
104.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
103.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
103.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
103.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
102.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
102.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
102.6
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
102.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
102.5
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
102.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
101.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
100.7
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
100.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
99.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
99.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
99.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
99.1
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
98.4
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
98.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
96.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
96.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
96.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
95.9
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
95.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
94.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
94.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
93.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
92.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
92.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
92.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
91.8
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
91.6
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
90.9
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
90.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
90.8
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
90.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
90.2
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
88.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
88.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
88.2
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
87.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
87.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
87.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
86.0
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
85.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
84.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
84.6
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
84.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
84.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
83.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
82.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
82.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
82.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
82.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
82.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
81.0
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
80.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
80.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
79.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
78.9
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
78.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
78.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
77.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
77.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
77.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
73.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
71.9
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
68.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
67.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
63.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
60.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
56.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
55.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
53.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
105.3
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 105.3
Samples: 1
Max nTPM: 105.3
Min nTPM: 105.3
Sample A
105.3
Midbrain nTPM: 74.8
Samples: 1
Max nTPM: 74.8
Min nTPM: 74.8
Sample A
74.8
Superior colliculi nTPM: 104.3
Samples: 1
Max nTPM: 104.3
Min nTPM: 104.3
Sample A
104.3
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
318.3
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 254.4
Samples: 3
Max nTPM: 312.0
Min nTPM: 173.0
Sample A
Female
312.0
Sample B
Female
173.0
Sample C
Male
278.1
Midbrain nTPM: 289.3
Samples: 3
Max nTPM: 402.3
Min nTPM: 185.0
Sample B
Female
185.0
Sample C
Male
402.3
Sample D
Male
280.5
Periaqueductal gray nTPM: 174.5
Samples: 3
Max nTPM: 203.1
Min nTPM: 144.7
Sample B
Female
175.8
Sample C
Male
203.1
Sample D
Male
144.7
Superior colliculi nTPM: 318.3
Samples: 4
Max nTPM: 460.9
Min nTPM: 230.5
Sample A
Female
315.4
Sample B
Female
230.5
Sample C
Male
460.9
Sample D
Male
266.5
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
399.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 399.5
Samples: 4
Max nTPM: 410.1
Min nTPM: 388.7
Sample A
390.1
Sample B
388.7
Sample C
410.1
Sample D
408.9
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The Human Protein Atlas project is funded
