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  • NDUFS3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:132.7 nTPM
HPA Brain:33.0 nTPM
GTEx:132.7 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:61.3 nTPM
Mouse:187.9 nTPM
Allen mouse:18.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.0
Sample id Sample description nTPM
Amygdala
nTPM: 33.0
2814 Male, age 76, right hemisphere 38.6
2695 Female, age 67, right hemisphere 36.7
1987 Female, age 91, left hemisphere 32.2
2514 Male, age 75, right hemisphere 32.0
2517 Female, age 94, left hemisphere 25.5
Basal amygdala
nTPM: 25.4
2609 Male, age 75, right hemisphere 33.4
2110 Male, age 80, left hemisphere 30.3
2243 Female, age 91, right hemisphere 26.3
1955 Male, age 76, both hemispheres 25.4
2685 Female, age 94, left hemisphere 22.5
2827 Female, age 67, right hemisphere 14.5
Central amygdala
nTPM: 28.1
1905 Male, age 76, both hemispheres 41.2
2515 Male, age 75, right hemisphere 28.9
2239 Male, age 80, left hemisphere 27.4
2826 Female, age 94, left hemisphere 24.0
2701 Female, age 91, right hemisphere 19.2
Corticomedial amygdala
nTPM: 25.7
2829 Male, age 80, left hemisphere 32.3
2428 Male, age 75, right hemisphere 31.6
2429 Female, age 94, left hemisphere 25.7
2242 Female, age 91, right hemisphere 25.3
2240 Male, age 76, both hemispheres 25.1
2535 Female, age 67, right hemisphere 14.2
Lateral amygdala
nTPM: 25.8
1883 Male, age 76, both hemispheres 40.0
2516 Male, age 75, right hemisphere 30.2
2534 Female, age 94, left hemisphere 25.5
2255 Female, age 91, right hemisphere 21.6
2256 Male, age 80, left hemisphere 20.2
2830 Female, age 67, right hemisphere 17.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 132.7
Samples: 181

Max nTPM: 322.6
Min nTPM: 57.2
Std nTPM: 41.8
Median nTPM: 129.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 322.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 316.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 313.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 249.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 232.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 227.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 223.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 200.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 192.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 190.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 186.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 184.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 184.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 181.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 180.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 180.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 178.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 178.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 177.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 177.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 173.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 172.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 169.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 168.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 168.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 166.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 165.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 164.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 162.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 162.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 162.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 158.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 158.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 157.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 156.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 156.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 155.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 155.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 154.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 154.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 152.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 152.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 152.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 152.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 152.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 151.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 150.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 150.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 150.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 150.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 149.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 149.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 148.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 148.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 148.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 148.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 147.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 146.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 146.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 145.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 144.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 144.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 143.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 143.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 142.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 141.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 139.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 139.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 139.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 139.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 139.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 139.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 138.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 138.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 138.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 138.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 137.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 137.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 136.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 136.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 135.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 135.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 135.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 134.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 133.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 132.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 131.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 129.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 129.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 129.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 129.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 128.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 128.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 128.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 127.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 127.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 127.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 126.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 126.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 126.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 125.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 125.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 124.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 124.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 124.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 124.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 123.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 123.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 122.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 121.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 121.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 120.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 120.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 119.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 119.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 118.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 118.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 116.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 116.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 115.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 114.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 113.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 113.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 113.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 112.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 111.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 110.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 108.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 108.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 107.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 107.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 107.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 107.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 106.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 105.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 105.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 105.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 104.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 104.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 104.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 103.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 103.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 102.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 101.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 100.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 100.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 100.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 99.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 98.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 98.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 98.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 97.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 97.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 97.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 96.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 95.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 94.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 92.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 90.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 90.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 89.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 87.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 86.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 86.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 84.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 81.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 81.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 77.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 76.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 75.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 75.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 70.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 70.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 69.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 66.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 65.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 65.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 62.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 61.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 57.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 57.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 68.5
FF:10151-102I7 76 years, female 68.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.3
Pig sample Sample description nTPM
Amygdala
nTPM: 61.4
Samples: 4

Max nTPM: 79.8
Min nTPM: 53.9
Sample A Female 79.8
Sample B Female 56.2
Sample C Male 53.9
Sample D Male 55.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 188.0
Samples: 4

Max nTPM: 196.0
Min nTPM: 182.9
Sample A Male 187.4
Sample B Male 182.9
Sample C Female 196.0
Sample D Female 185.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.1
67767465 Antisense, RP_040916_02_B04, Mouse strain C57BL/6J (56 days, male) 18.1

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