MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2389.1 nTPM
HPA Brain:269.2 nTPM
GTEx:2389.1 nTPM
FANTOM5:116.9 Scaled Tags Per Million
Mouse:847.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 269.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 228.8
2411 Female, age 72, unknown 297.4
1870 Female, age 42, unknown 286.0
2019 Male, age 18, unknown 248.6
2586 Male, age 75, left hemisphere 243.1
2666 Male, age 74, left hemisphere 236.7
2828 Female, age 72, unknown 231.9
1827 Male, age 72, unknown 198.3
1830 Male, age 51, unknown 193.9
1833 Male, age 53, unknown 179.4
2219 Male, age 76, both hemispheres 172.6
Dorsal raphe nucleus
nTPM: 231.9
2298 Female, age 72, unknown 343.7
2016 Female, age 72, unknown 225.1
2750 Male, age 76, both hemispheres 217.2
1828 Male, age 53, unknown 216.3
2047 Male, age 72, unknown 156.9
Inferior colliculus
nTPM: 225.9
2097 Female, age 72, unknown 296.4
1890 Male, age 53, unknown 266.1
1848 Female, age 42, unknown 177.5
2849 Male, age 72, unknown 163.6
Median raphe nucleus
nTPM: 176.5
2220 Male, age 76, midline 176.5
Periaquaductal grey, anterior
nTPM: 255.8
2502 Female, age 75, unknown 331.1
1795 Male, age 51, unknown 221.9
1947 Male, age 18, unknown 214.6
Periaquaductal grey, dorsal
nTPM: 198.9
1840 Male, age 53, unknown 234.2
2464 Female, age 72, unknown 222.6
1831 Male, age 72, unknown 194.9
2850 Male, age 76, both hemispheres 143.8
Periaquaductal grey, lateral
nTPM: 184.1
2053 Male, age 18, unknown 239.7
2140 Male, age 76, both hemispheres 178.4
2272 Male, age 74, both hemispheres 134.2
Pretectal area
nTPM: 211.7
2316 Male, age 76, right hemisphere 303.1
1816 Male, age 51, unknown 242.2
2224 Female, age 72, unknown 236.8
2007 Male, age 72, unknown 230.5
1815 Male, age 53, unknown 215.3
1817 Female, age 42, unknown 209.5
2825 Male, age 18, unknown 194.4
2667 Female, age 75, unknown 181.6
1944 Female, age 72, unknown 178.1
2407 Male, age 75, both hemispheres 178.1
2273 Male, age 74, both hemispheres 159.4
Red nucleus
nTPM: 259.6
2503 Female, age 72, unknown 339.9
1821 Female, age 72, unknown 309.8
2227 Male, age 72, unknown 305.8
1904 Male, age 53, unknown 299.9
2769 Male, age 72, unknown 276.2
1865 Male, age 51, unknown 246.3
2588 Male, age 74, left hemisphere 242.8
2785 Male, age 18, unknown 240.8
1954 Female, age 42, unknown 234.9
2725 Female, age 75, unknown 228.3
2584 Male, age 75, left hemisphere 200.6
2823 Male, age 76, right hemisphere 190.4
Substantia nigra
nTPM: 258.7
1851 Male, age 51, unknown 382.8
2409 Female, age 72, unknown 337.0
2241 Male, age 72, unknown 315.9
2665 Male, age 74, both hemispheres 263.7
1916 Female, age 42, unknown 256.3
2590 Female, age 75, unknown 236.9
1889 Female, age 72, unknown 235.7
2699 Male, age 18, unknown 232.0
2583 Male, age 75, right hemisphere 164.6
1941 Male, age 53, unknown 161.7
Superior colliculus
nTPM: 245.3
1995 Male, age 72, unknown 293.8
2587 Male, age 74, left hemisphere 290.1
1913 Female, age 42, unknown 274.3
2668 Female, age 75, unknown 249.9
1796 Male, age 53, unknown 249.5
2664 Male, age 75, both hemispheres 242.3
2261 Male, age 18, unknown 236.1
2087 Female, age 72, unknown 219.5
1895 Male, age 76, right hemisphere 208.8
1839 Male, age 51, unknown 189.2
Ventral tegmental area
nTPM: 269.2
1915 Female, age 42, unknown 344.6
2021 Male, age 53, unknown 294.6
2223 Female, age 72, unknown 279.2
1942 Male, age 51, unknown 260.5
2410 Female, age 72, unknown 249.8
2218 Male, age 76, both hemispheres 186.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2389.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2389.1
Samples: 183

Max nTPM: 7468.5
Min nTPM: 663.9
Std nTPM: 1025.0
Median nTPM: 2201.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 7468.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 6561.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 6041.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 5230.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 4562.8
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 4497.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 4367.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 4298.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 4188.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 4162.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 4088.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 116.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.9
FF:10158-103A5 76 years, female 116.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 847.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 847.8
Samples: 4

Max nTPM: 1084.3
Min nTPM: 692.3
Sample A Male 1084.3
Sample B Male 816.9
Sample C Female 692.3
Sample D Female 797.8

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