A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11717.7
nTPM
Monaco:
1224.7
nTPM
Schmiedel:
138.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11717.7
HPA sample
nTPM
Memory B-cell nTPM: 11717.7
Samples: 6
Max nTPM: 14953.2
Min nTPM: 5343.7
P10809_1017
11315.3
P10809_1025
13761.8
P10809_1044
5343.7
P10809_1063
13721.3
P10809_1092
11210.6
P10809_1105
14953.2
Naive B-cell nTPM: 10385.8
Samples: 6
Max nTPM: 12861.2
Min nTPM: 5460.6
P10809_1011
11018.6
P10809_1029
11429.8
P10809_1048
5460.6
P10809_1067
11817.3
P10809_1091
9727.0
P10809_1104
12861.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1224.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1224.7
Samples: 4
Max nTPM: 1957.1
Min nTPM: 354.3
RHH5310_R3677
838.5
RHH5218_R3590
354.3
RHH5247_R3619
1748.8
RHH5276_R3648
1957.1
Naive B-cell nTPM: 1165.8
Samples: 4
Max nTPM: 2435.7
Min nTPM: 445.7
RHH5308_R3675
845.1
RHH5216_R3588
445.7
RHH5245_R3617
2435.7
RHH5274_R3646
936.5
Non-switched memory B-cell nTPM: 893.5
Samples: 4
Max nTPM: 1858.8
Min nTPM: 347.7
RHH5309_R3676
921.9
RHH5217_R3589
445.4
RHH5246_R3618
347.7
RHH5275_R3647
1858.8
Plasmablast nTPM: 641.8
Samples: 4
Max nTPM: 799.9
Min nTPM: 331.9
RHH5312_R3679
796.5
RHH5220_R3592
331.9
RHH5249_R3621
639.0
RHH5278_R3650
799.9
Switched memory B-cell nTPM: 795.0
Samples: 4
Max nTPM: 1252.8
Min nTPM: 623.8
RHH5311_R3678
669.4
RHH5219_R3591
623.8
RHH5248_R3620
634.0
RHH5277_R3649
1252.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
138.8
Schmiedel sample id
TPM
Naive B-cell TPM: 138.8
Samples: 91
Max TPM: 176.2
Min TPM: 67.6
B_CELL_NAIVE_1
176.2
B_CELL_NAIVE_2
173.4
B_CELL_NAIVE_3
170.7
B_CELL_NAIVE_4
169.1
B_CELL_NAIVE_5
166.9
B_CELL_NAIVE_6
166.9
B_CELL_NAIVE_7
165.6
B_CELL_NAIVE_8
163.7
B_CELL_NAIVE_9
163.7
B_CELL_NAIVE_10
162.0
B_CELL_NAIVE_11
161.9
B_CELL_NAIVE_12
161.7
B_CELL_NAIVE_13
161.7
B_CELL_NAIVE_14
158.9
B_CELL_NAIVE_15
157.8
B_CELL_NAIVE_16
157.4
B_CELL_NAIVE_17
156.8
B_CELL_NAIVE_18
156.2
B_CELL_NAIVE_19
155.6
B_CELL_NAIVE_20
155.4
B_CELL_NAIVE_21
154.6
B_CELL_NAIVE_22
154.4
B_CELL_NAIVE_23
154.3
B_CELL_NAIVE_24
153.7
B_CELL_NAIVE_25
153.2
B_CELL_NAIVE_26
153.0
B_CELL_NAIVE_27
152.5
B_CELL_NAIVE_28
152.4
B_CELL_NAIVE_29
151.7
B_CELL_NAIVE_30
151.1
B_CELL_NAIVE_31
150.4
B_CELL_NAIVE_32
150.0
B_CELL_NAIVE_33
149.7
B_CELL_NAIVE_34
149.4
B_CELL_NAIVE_35
148.9
B_CELL_NAIVE_36
148.3
B_CELL_NAIVE_37
147.3
B_CELL_NAIVE_38
147.2
B_CELL_NAIVE_39
146.1
B_CELL_NAIVE_40
145.9
B_CELL_NAIVE_41
145.5
B_CELL_NAIVE_42
144.9
B_CELL_NAIVE_43
144.2
B_CELL_NAIVE_44
143.7
B_CELL_NAIVE_45
143.0
B_CELL_NAIVE_46
142.9
B_CELL_NAIVE_47
142.6
B_CELL_NAIVE_48
141.5
B_CELL_NAIVE_49
140.9
B_CELL_NAIVE_50
140.5
B_CELL_NAIVE_51
140.2
B_CELL_NAIVE_52
138.1
B_CELL_NAIVE_53
137.0
B_CELL_NAIVE_54
137.0
B_CELL_NAIVE_55
136.5
B_CELL_NAIVE_56
136.4
B_CELL_NAIVE_57
136.1
B_CELL_NAIVE_58
135.4
B_CELL_NAIVE_59
135.0
B_CELL_NAIVE_60
134.9
B_CELL_NAIVE_61
134.2
B_CELL_NAIVE_62
133.9
B_CELL_NAIVE_63
133.4
B_CELL_NAIVE_64
132.7
B_CELL_NAIVE_65
131.8
B_CELL_NAIVE_66
130.4
B_CELL_NAIVE_67
129.5
B_CELL_NAIVE_68
128.4
B_CELL_NAIVE_69
128.2
B_CELL_NAIVE_70
127.6
B_CELL_NAIVE_71
127.4
B_CELL_NAIVE_72
126.5
B_CELL_NAIVE_73
126.4
B_CELL_NAIVE_74
124.5
B_CELL_NAIVE_75
120.7
B_CELL_NAIVE_76
120.2
B_CELL_NAIVE_77
118.8
B_CELL_NAIVE_78
118.4
B_CELL_NAIVE_79
117.2
B_CELL_NAIVE_80
116.4
B_CELL_NAIVE_81
114.4
B_CELL_NAIVE_82
103.8
B_CELL_NAIVE_83
101.5
B_CELL_NAIVE_84
101.1
B_CELL_NAIVE_85
97.6
B_CELL_NAIVE_86
95.4
B_CELL_NAIVE_87
94.5
B_CELL_NAIVE_88
88.4
B_CELL_NAIVE_89
83.6
B_CELL_NAIVE_90
82.1
B_CELL_NAIVE_91
67.6
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