A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4416.4
nTPM
Monaco:
559.5
nTPM
Schmiedel:
58.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4416.4
HPA sample
nTPM
Classical monocyte nTPM: 4416.3
Samples: 6
Max nTPM: 8295.0
Min nTPM: 2529.3
P10809_1003
8295.0
P10809_1020
2951.0
P10809_1039
2529.3
P10809_1058
4119.4
P10809_1080
3601.9
P10809_1107
5001.5
Intermediate monocyte nTPM: 3458.9
Samples: 6
Max nTPM: 5513.2
Min nTPM: 1882.2
P10809_1004
2480.0
P10809_1023
3280.3
P10809_1042
3458.2
P10809_1061
1882.2
P10809_1081
4139.4
P10809_1108
5513.2
Non-classical monocyte nTPM: 3211.3
Samples: 5
Max nTPM: 4249.0
Min nTPM: 2106.4
P10809_1005
3108.1
P10809_1053
3096.7
P10809_1072
2106.4
P10809_1082
3496.3
P10809_1109
4249.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
559.5
Monaco sample
nTPM
Classical monocyte nTPM: 270.5
Samples: 4
Max nTPM: 357.4
Min nTPM: 178.9
RHH5313_R3680
357.4
RHH5221_R3593
287.6
RHH5250_R3622
178.9
RHH5279_R3651
258.0
Intermediate monocyte nTPM: 559.5
Samples: 4
Max nTPM: 860.0
Min nTPM: 253.6
RHH5314_R3681
417.5
RHH5222_R3594
860.0
RHH5251_R3623
707.0
RHH5280_R3652
253.6
Non-classical monocyte nTPM: 434.2
Samples: 4
Max nTPM: 528.6
Min nTPM: 329.3
RHH5315_R3682
528.6
RHH5223_R3595
478.0
RHH5252_R3624
400.7
RHH5281_R3653
329.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.0
Schmiedel sample id
TPM
Classical monocyte TPM: 44.7
Samples: 91
Max TPM: 63.2
Min TPM: 31.0
MONOCYTES_1
63.2
MONOCYTES_2
61.0
MONOCYTES_3
57.4
MONOCYTES_4
57.0
MONOCYTES_5
55.7
MONOCYTES_6
53.8
MONOCYTES_7
53.8
MONOCYTES_8
53.0
MONOCYTES_9
52.7
MONOCYTES_10
52.7
MONOCYTES_11
52.2
MONOCYTES_12
51.8
MONOCYTES_13
51.7
MONOCYTES_14
51.6
MONOCYTES_15
51.5
MONOCYTES_16
51.2
MONOCYTES_17
50.6
MONOCYTES_18
50.1
MONOCYTES_19
50.0
MONOCYTES_20
49.4
MONOCYTES_21
49.3
MONOCYTES_22
49.1
MONOCYTES_23
48.7
MONOCYTES_24
48.6
MONOCYTES_25
48.6
MONOCYTES_26
48.5
MONOCYTES_27
48.5
MONOCYTES_28
48.3
MONOCYTES_29
48.0
MONOCYTES_30
47.6
MONOCYTES_31
47.5
MONOCYTES_32
47.3
MONOCYTES_33
47.3
MONOCYTES_34
47.2
MONOCYTES_35
47.1
MONOCYTES_36
46.7
MONOCYTES_37
46.7
MONOCYTES_38
46.3
MONOCYTES_39
46.1
MONOCYTES_40
46.0
MONOCYTES_41
45.9
MONOCYTES_42
45.9
MONOCYTES_43
45.7
MONOCYTES_44
45.4
MONOCYTES_45
45.4
MONOCYTES_46
45.0
MONOCYTES_47
44.8
MONOCYTES_48
44.7
MONOCYTES_49
44.4
MONOCYTES_50
44.4
MONOCYTES_51
44.1
MONOCYTES_52
44.1
MONOCYTES_53
44.0
MONOCYTES_54
43.3
MONOCYTES_55
42.7
MONOCYTES_56
42.5
MONOCYTES_57
42.5
MONOCYTES_58
42.5
MONOCYTES_59
42.4
MONOCYTES_60
42.4
MONOCYTES_61
41.9
MONOCYTES_62
41.8
MONOCYTES_63
41.7
MONOCYTES_64
41.6
MONOCYTES_65
41.3
MONOCYTES_66
41.1
MONOCYTES_67
40.7
MONOCYTES_68
40.6
MONOCYTES_69
40.1
MONOCYTES_70
39.8
MONOCYTES_71
39.6
MONOCYTES_72
38.8
MONOCYTES_73
38.7
MONOCYTES_74
38.7
MONOCYTES_75
37.8
MONOCYTES_76
37.5
MONOCYTES_77
37.4
MONOCYTES_78
36.9
MONOCYTES_79
36.9
MONOCYTES_80
36.1
MONOCYTES_81
35.8
MONOCYTES_82
35.5
MONOCYTES_83
34.5
MONOCYTES_84
34.5
MONOCYTES_85
34.0
MONOCYTES_86
33.8
MONOCYTES_87
33.7
MONOCYTES_88
32.3
MONOCYTES_89
32.1
MONOCYTES_90
32.0
MONOCYTES_91
31.0
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Non-classical monocyte TPM: 58.0
Samples: 90
Max TPM: 83.7
Min TPM: 35.3
M2_1
83.7
M2_2
70.6
M2_3
69.5
M2_4
68.3
M2_5
67.8
M2_6
67.5
M2_7
66.8
M2_8
66.7
M2_9
66.4
M2_10
66.4
M2_11
66.0
M2_12
64.9
M2_13
64.7
M2_14
64.7
M2_15
64.5
M2_16
64.3
M2_17
64.2
M2_18
63.9
M2_19
63.8
M2_20
63.8
M2_21
63.3
M2_22
63.2
M2_23
63.1
M2_24
63.1
M2_25
62.9
M2_26
62.7
M2_27
62.7
M2_28
62.6
M2_29
62.3
M2_30
62.1
M2_31
62.0
M2_32
61.5
M2_33
61.4
M2_34
61.3
M2_35
61.3
M2_36
60.7
M2_37
60.5
M2_38
59.7
M2_39
59.6
M2_40
59.5
M2_41
59.0
M2_42
58.8
M2_43
58.7
M2_44
58.7
M2_45
58.4
M2_46
57.9
M2_47
57.9
M2_48
57.7
M2_49
57.4
M2_50
57.2
M2_51
57.1
M2_52
56.9
M2_53
56.5
M2_54
56.5
M2_55
56.5
M2_56
56.5
M2_57
56.2
M2_58
56.2
M2_59
55.9
M2_60
55.2
M2_61
54.7
M2_62
54.3
M2_63
54.2
M2_64
54.2
M2_65
54.1
M2_66
53.8
M2_67
53.6
M2_68
53.5
M2_69
53.4
M2_70
53.2
M2_71
52.9
M2_72
52.7
M2_73
52.6
M2_74
52.1
M2_75
52.0
M2_76
51.2
M2_77
50.1
M2_78
49.7
M2_79
48.9
M2_80
48.8
M2_81
48.8
M2_82
48.7
M2_83
47.2
M2_84
47.1
M2_85
46.1
M2_86
45.8
M2_87
45.7
M2_88
45.2
M2_89
44.2
M2_90
35.3
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