MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.9 nTPM
HPA Brain:4.1 nTPM
GTEx:15.9 nTPM
FANTOM5:20.5 Scaled Tags Per Million
Pig:11.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 4.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.0
2411 Female, age 72, unknown 4.2
1827 Male, age 72, unknown 3.8
2828 Female, age 72, unknown 3.6
1870 Female, age 42, unknown 3.5
2586 Male, age 75, left hemisphere 2.9
2019 Male, age 18, unknown 2.8
1833 Male, age 53, unknown 2.5
2219 Male, age 76, both hemispheres 2.3
2666 Male, age 74, left hemisphere 2.2
1830 Male, age 51, unknown 2.0
Dorsal raphe nucleus
nTPM: 3.6
2298 Female, age 72, unknown 5.8
1828 Male, age 53, unknown 3.3
2750 Male, age 76, both hemispheres 3.2
2047 Male, age 72, unknown 2.9
2016 Female, age 72, unknown 2.8
Inferior colliculus
nTPM: 2.9
2097 Female, age 72, unknown 3.6
1890 Male, age 53, unknown 3.1
1848 Female, age 42, unknown 2.9
2849 Male, age 72, unknown 2.1
Median raphe nucleus
nTPM: 3.3
2220 Male, age 76, midline 3.3
Periaquaductal grey, anterior
nTPM: 3.7
1795 Male, age 51, unknown 4.2
1947 Male, age 18, unknown 3.5
2502 Female, age 75, unknown 3.5
Periaquaductal grey, dorsal
nTPM: 2.8
2464 Female, age 72, unknown 3.7
1831 Male, age 72, unknown 2.8
1840 Male, age 53, unknown 2.4
2850 Male, age 76, both hemispheres 2.4
Periaquaductal grey, lateral
nTPM: 4.1
2053 Male, age 18, unknown 4.4
2272 Male, age 74, both hemispheres 4.4
2140 Male, age 76, both hemispheres 3.4
Pretectal area
nTPM: 3.7
2273 Male, age 74, both hemispheres 5.6
2316 Male, age 76, right hemisphere 4.8
1816 Male, age 51, unknown 4.1
2825 Male, age 18, unknown 3.8
2224 Female, age 72, unknown 3.7
1944 Female, age 72, unknown 3.6
2007 Male, age 72, unknown 3.6
1817 Female, age 42, unknown 3.3
1815 Male, age 53, unknown 3.2
2667 Female, age 75, unknown 3.2
2407 Male, age 75, both hemispheres 2.2
Red nucleus
nTPM: 2.9
2725 Female, age 75, unknown 3.5
2227 Male, age 72, unknown 3.4
2503 Female, age 72, unknown 3.3
2785 Male, age 18, unknown 3.3
1821 Female, age 72, unknown 3.2
2823 Male, age 76, right hemisphere 3.1
1954 Female, age 42, unknown 3.0
1904 Male, age 53, unknown 2.9
2769 Male, age 72, unknown 2.7
1865 Male, age 51, unknown 2.6
2588 Male, age 74, left hemisphere 2.6
2584 Male, age 75, left hemisphere 1.5
Substantia nigra
nTPM: 2.9
2590 Female, age 75, unknown 3.7
1916 Female, age 42, unknown 3.6
1851 Male, age 51, unknown 3.5
1889 Female, age 72, unknown 3.4
1941 Male, age 53, unknown 3.4
2241 Male, age 72, unknown 3.3
2665 Male, age 74, both hemispheres 2.5
2583 Male, age 75, right hemisphere 2.0
2409 Female, age 72, unknown 1.9
2699 Male, age 18, unknown 1.7
Superior colliculus
nTPM: 3.0
2261 Male, age 18, unknown 3.8
1796 Male, age 53, unknown 3.6
2087 Female, age 72, unknown 3.6
1895 Male, age 76, right hemisphere 3.4
1995 Male, age 72, unknown 2.9
2664 Male, age 75, both hemispheres 2.9
1913 Female, age 42, unknown 2.7
1839 Male, age 51, unknown 2.5
2587 Male, age 74, left hemisphere 2.5
2668 Female, age 75, unknown 2.3
Ventral tegmental area
nTPM: 3.1
1942 Male, age 51, unknown 3.6
2410 Female, age 72, unknown 3.4
2223 Female, age 72, unknown 3.3
2021 Male, age 53, unknown 3.2
1915 Female, age 42, unknown 3.0
2218 Male, age 76, both hemispheres 2.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.9
Samples: 183

Max nTPM: 31.5
Min nTPM: 5.2
Std nTPM: 4.0
Median nTPM: 15.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 31.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 27.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 27.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 26.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 26.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 25.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 24.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 24.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 24.0
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 23.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 23.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.5
FF:10158-103A5 76 years, female 20.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.4
Samples: 4

Max nTPM: 11.3
Min nTPM: 7.5
Sample A Female 11.3
Sample B Female 8.2
Sample C Male 10.7
Sample D Male 7.5
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 12.1
Min nTPM: 8.2
Sample A Female 9.7
Sample B Female 8.2
Sample C Male 11.2
Sample D Male 12.1
Periaqueductal gray
nTPM: 8.1
Samples: 3

Max nTPM: 8.8
Min nTPM: 7.8
Sample B Female 7.8
Sample C Male 8.8
Sample D Male 7.8
Superior colliculi
nTPM: 11.4
Samples: 4

Max nTPM: 13.1
Min nTPM: 9.7
Sample A Female 13.1
Sample B Female 10.2
Sample C Male 12.4
Sample D Male 9.7

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