MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.6 nTPM
HPA Brain:129.0 nTPM
GTEx:63.6 nTPM
FANTOM5:32.1 Scaled Tags Per Million
Pig:50.9 nTPM
Mouse:52.7 nTPM
Allen mouse:5.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 129.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.5
2586 Male, age 75, left hemisphere 159.7
2828 Female, age 72, unknown 139.1
1827 Male, age 72, unknown 132.6
2666 Male, age 74, left hemisphere 128.2
1833 Male, age 53, unknown 123.0
2019 Male, age 18, unknown 121.8
2219 Male, age 76, both hemispheres 120.8
1830 Male, age 51, unknown 120.7
2411 Female, age 72, unknown 119.2
1870 Female, age 42, unknown 110.3
Dorsal raphe nucleus
nTPM: 101.9
2750 Male, age 76, both hemispheres 115.4
1828 Male, age 53, unknown 102.2
2047 Male, age 72, unknown 98.6
2016 Female, age 72, unknown 98.3
2298 Female, age 72, unknown 95.1
Inferior colliculus
nTPM: 112.2
2849 Male, age 72, unknown 120.4
1890 Male, age 53, unknown 111.8
1848 Female, age 42, unknown 111.0
2097 Female, age 72, unknown 105.4
Median raphe nucleus
nTPM: 100.4
2220 Male, age 76, midline 100.4
Periaquaductal grey, anterior
nTPM: 120.7
1795 Male, age 51, unknown 126.4
2502 Female, age 75, unknown 118.2
1947 Male, age 18, unknown 117.6
Periaquaductal grey, dorsal
nTPM: 107.5
1831 Male, age 72, unknown 115.3
2464 Female, age 72, unknown 109.2
2850 Male, age 76, both hemispheres 106.9
1840 Male, age 53, unknown 98.4
Periaquaductal grey, lateral
nTPM: 112.5
2053 Male, age 18, unknown 116.1
2272 Male, age 74, both hemispheres 114.2
2140 Male, age 76, both hemispheres 107.3
Pretectal area
nTPM: 129.0
1816 Male, age 51, unknown 144.1
2667 Female, age 75, unknown 143.5
2007 Male, age 72, unknown 140.7
1817 Female, age 42, unknown 138.8
2407 Male, age 75, both hemispheres 138.8
1815 Male, age 53, unknown 137.8
1944 Female, age 72, unknown 129.2
2316 Male, age 76, right hemisphere 122.4
2273 Male, age 74, both hemispheres 113.3
2825 Male, age 18, unknown 110.5
2224 Female, age 72, unknown 100.4
Red nucleus
nTPM: 125.6
2584 Male, age 75, left hemisphere 143.5
2588 Male, age 74, left hemisphere 143.1
2823 Male, age 76, right hemisphere 135.2
2785 Male, age 18, unknown 129.1
2769 Male, age 72, unknown 127.4
1904 Male, age 53, unknown 127.3
2227 Male, age 72, unknown 127.2
1865 Male, age 51, unknown 126.4
2503 Female, age 72, unknown 117.6
1821 Female, age 72, unknown 113.7
1954 Female, age 42, unknown 111.8
2725 Female, age 75, unknown 104.7
Substantia nigra
nTPM: 115.4
2665 Male, age 74, both hemispheres 137.2
2583 Male, age 75, right hemisphere 134.4
2590 Female, age 75, unknown 122.5
1889 Female, age 72, unknown 121.5
2699 Male, age 18, unknown 120.0
1941 Male, age 53, unknown 112.4
1851 Male, age 51, unknown 111.9
1916 Female, age 42, unknown 111.9
2409 Female, age 72, unknown 97.4
2241 Male, age 72, unknown 85.0
Superior colliculus
nTPM: 128.1
2664 Male, age 75, both hemispheres 156.4
2261 Male, age 18, unknown 141.3
2668 Female, age 75, unknown 129.7
1995 Male, age 72, unknown 128.9
1913 Female, age 42, unknown 128.4
2087 Female, age 72, unknown 127.6
1796 Male, age 53, unknown 125.8
1895 Male, age 76, right hemisphere 120.1
1839 Male, age 51, unknown 116.7
2587 Male, age 74, left hemisphere 106.3
Ventral tegmental area
nTPM: 107.5
2021 Male, age 53, unknown 113.7
2410 Female, age 72, unknown 108.7
2223 Female, age 72, unknown 108.1
2218 Male, age 76, both hemispheres 107.2
1942 Male, age 51, unknown 106.1
1915 Female, age 42, unknown 101.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 63.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.6
Samples: 183

Max nTPM: 135.1
Min nTPM: 39.7
Std nTPM: 12.5
Median nTPM: 61.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 135.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 105.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 103.9
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 100.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 96.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 90.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 90.4
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 90.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 86.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 86.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 85.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.1
FF:10158-103A5 76 years, female 32.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 50.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.3
Samples: 4

Max nTPM: 50.8
Min nTPM: 41.3
Sample A Female 50.8
Sample B Female 41.4
Sample C Male 47.5
Sample D Male 41.3
Midbrain
nTPM: 50.5
Samples: 4

Max nTPM: 58.5
Min nTPM: 41.9
Sample A Female 55.1
Sample B Female 41.9
Sample C Male 58.5
Sample D Male 46.3
Periaqueductal gray
nTPM: 39.3
Samples: 3

Max nTPM: 42.3
Min nTPM: 35.9
Sample B Female 39.7
Sample C Male 42.3
Sample D Male 35.9
Superior colliculi
nTPM: 50.9
Samples: 4

Max nTPM: 52.9
Min nTPM: 48.7
Sample A Female 52.0
Sample B Female 48.7
Sample C Male 52.9
Sample D Male 50.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 52.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.8
Samples: 4

Max nTPM: 58.3
Min nTPM: 46.8
Sample A Male 53.7
Sample B Male 46.8
Sample C Female 58.3
Sample D Female 52.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
68563006 Antisense, RP_050120_02_H10, Mouse strain C57BL/6J (56 days, male) 5.9

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo