BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:299.4 nTPM
HPA Brain:146.8 nTPM
GTEx:299.4 nTPM
FANTOM5:168.0 Scaled Tags Per Million
Mouse:253.3 nTPM
Rat:139.3 nTPM
Pig:274.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 146.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.5
2411 Female, age 72, unknown 143.5
1870 Female, age 42, unknown 132.1
1833 Male, age 53, unknown 127.5
1830 Male, age 51, unknown 124.2
2019 Male, age 18, unknown 117.8
1827 Male, age 72, unknown 114.5
2586 Male, age 75, left hemisphere 113.5
2828 Female, age 72, unknown 108.4
2666 Male, age 74, left hemisphere 108.2
2219 Male, age 76, both hemispheres 95.1
Dorsal raphe nucleus
nTPM: 103.8
2750 Male, age 76, both hemispheres 144.4
1828 Male, age 53, unknown 102.2
2298 Female, age 72, unknown 101.2
2047 Male, age 72, unknown 85.9
2016 Female, age 72, unknown 85.2
Inferior colliculus
nTPM: 95.7
2097 Female, age 72, unknown 103.1
1890 Male, age 53, unknown 96.2
2849 Male, age 72, unknown 91.9
1848 Female, age 42, unknown 91.5
Median raphe nucleus
nTPM: 116.6
2220 Male, age 76, midline 116.6
Periaquaductal grey, anterior
nTPM: 103.4
1947 Male, age 18, unknown 113.1
2502 Female, age 75, unknown 105.4
1795 Male, age 51, unknown 91.7
Periaquaductal grey, dorsal
nTPM: 80.6
1831 Male, age 72, unknown 88.1
2464 Female, age 72, unknown 85.2
2850 Male, age 76, both hemispheres 81.8
1840 Male, age 53, unknown 67.4
Periaquaductal grey, lateral
nTPM: 80.1
2053 Male, age 18, unknown 87.3
2272 Male, age 74, both hemispheres 80.0
2140 Male, age 76, both hemispheres 73.0
Pretectal area
nTPM: 104.0
1817 Female, age 42, unknown 124.6
1815 Male, age 53, unknown 123.2
2007 Male, age 72, unknown 118.7
1816 Male, age 51, unknown 108.2
2825 Male, age 18, unknown 105.8
2316 Male, age 76, right hemisphere 103.2
2667 Female, age 75, unknown 100.8
1944 Female, age 72, unknown 95.4
2224 Female, age 72, unknown 91.8
2407 Male, age 75, both hemispheres 90.7
2273 Male, age 74, both hemispheres 81.5
Red nucleus
nTPM: 146.8
1821 Female, age 72, unknown 172.5
1865 Male, age 51, unknown 171.0
1904 Male, age 53, unknown 164.7
2503 Female, age 72, unknown 160.8
2227 Male, age 72, unknown 147.3
2769 Male, age 72, unknown 146.5
2588 Male, age 74, left hemisphere 143.1
2725 Female, age 75, unknown 138.4
2823 Male, age 76, right hemisphere 136.7
1954 Female, age 42, unknown 135.2
2785 Male, age 18, unknown 133.5
2584 Male, age 75, left hemisphere 111.9
Substantia nigra
nTPM: 111.1
1851 Male, age 51, unknown 129.2
1889 Female, age 72, unknown 124.4
2583 Male, age 75, right hemisphere 123.2
1916 Female, age 42, unknown 120.5
2665 Male, age 74, both hemispheres 111.7
2409 Female, age 72, unknown 106.4
2699 Male, age 18, unknown 103.1
1941 Male, age 53, unknown 98.0
2590 Female, age 75, unknown 97.7
2241 Male, age 72, unknown 97.1
Superior colliculus
nTPM: 112.6
1913 Female, age 42, unknown 138.9
2587 Male, age 74, left hemisphere 133.8
2668 Female, age 75, unknown 132.1
1995 Male, age 72, unknown 124.8
1796 Male, age 53, unknown 113.0
1895 Male, age 76, right hemisphere 109.3
2261 Male, age 18, unknown 105.5
1839 Male, age 51, unknown 99.3
2087 Female, age 72, unknown 90.3
2664 Male, age 75, both hemispheres 78.6
Ventral tegmental area
nTPM: 121.0
2223 Female, age 72, unknown 141.6
2410 Female, age 72, unknown 139.9
1915 Female, age 42, unknown 119.2
2218 Male, age 76, both hemispheres 119.1
2021 Male, age 53, unknown 107.0
1942 Male, age 51, unknown 99.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 299.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 299.4
Samples: 183

Max nTPM: 771.8
Min nTPM: 115.7
Std nTPM: 92.7
Median nTPM: 282.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 771.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 725.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 551.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 516.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 497.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 496.4
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 495.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 494.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 486.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 476.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 471.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 168.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 168.0
FF:10158-103A5 76 years, female 168.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 274.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 274.2
Samples: 3

Max nTPM: 337.7
Min nTPM: 213.8
Sample A Female 337.7
Sample B Female 213.8
Sample C Male 271.1
Midbrain
nTPM: 232.0
Samples: 3

Max nTPM: 292.8
Min nTPM: 200.7
Sample B Female 292.8
Sample C Male 200.7
Sample D Male 202.4
Periaqueductal gray
nTPM: 232.3
Samples: 3

Max nTPM: 250.3
Min nTPM: 209.4
Sample B Female 237.2
Sample C Male 250.3
Sample D Male 209.4
Superior colliculi
nTPM: 257.3
Samples: 4

Max nTPM: 317.0
Min nTPM: 202.6
Sample A Female 317.0
Sample B Female 202.6
Sample C Male 245.0
Sample D Male 264.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 253.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 253.4
Samples: 4

Max nTPM: 274.8
Min nTPM: 233.7
Sample A 274.8
Sample B 267.5
Sample C 233.7
Sample D 237.4

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 139.3
Rat sample Sample description nTPM
Midbrain
nTPM: 139.3
Samples: 4

Max nTPM: 148.9
Min nTPM: 128.0
Sample A 144.5
Sample A 148.9
Sample A 135.7
Sample A 128.0

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