A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
26.9
nTPM
Monaco:
14.4
nTPM
Schmiedel:
25.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.9
HPA sample
nTPM
Memory B-cell nTPM: 26.9
Samples: 6
Max nTPM: 45.8
Min nTPM: 11.6
P10809_1017
11.6
P10809_1025
33.8
P10809_1044
45.8
P10809_1063
23.8
P10809_1092
17.9
P10809_1105
28.5
Naive B-cell nTPM: 24.7
Samples: 6
Max nTPM: 52.4
Min nTPM: 8.8
P10809_1011
8.8
P10809_1029
20.9
P10809_1048
52.4
P10809_1067
21.6
P10809_1091
13.1
P10809_1104
31.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 7.8
Samples: 4
Max nTPM: 18.1
Min nTPM: 0.1
RHH5310_R3677
9.2
RHH5218_R3590
3.9
RHH5247_R3619
18.1
RHH5276_R3648
0.1
Naive B-cell nTPM: 12.9
Samples: 4
Max nTPM: 14.0
Min nTPM: 10.8
RHH5308_R3675
12.7
RHH5216_R3588
14.0
RHH5245_R3617
14.0
RHH5274_R3646
10.8
Non-switched memory B-cell nTPM: 11.6
Samples: 4
Max nTPM: 16.6
Min nTPM: 9.0
RHH5309_R3676
9.1
RHH5217_R3589
16.6
RHH5246_R3618
9.0
RHH5275_R3647
11.7
Plasmablast nTPM: 7.7
Samples: 4
Max nTPM: 13.2
Min nTPM: 4.3
RHH5312_R3679
13.2
RHH5220_R3592
7.2
RHH5249_R3621
6.1
RHH5278_R3650
4.3
Switched memory B-cell nTPM: 14.4
Samples: 4
Max nTPM: 22.4
Min nTPM: 5.5
RHH5311_R3678
16.1
RHH5219_R3591
22.4
RHH5248_R3620
5.5
RHH5277_R3649
13.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.2
Schmiedel sample id
TPM
Naive B-cell TPM: 25.2
Samples: 91
Max TPM: 36.2
Min TPM: 17.6
B_CELL_NAIVE_1
36.2
B_CELL_NAIVE_2
36.0
B_CELL_NAIVE_3
34.9
B_CELL_NAIVE_4
34.4
B_CELL_NAIVE_5
32.9
B_CELL_NAIVE_6
32.7
B_CELL_NAIVE_7
32.5
B_CELL_NAIVE_8
30.9
B_CELL_NAIVE_9
30.5
B_CELL_NAIVE_10
30.1
B_CELL_NAIVE_11
29.4
B_CELL_NAIVE_12
29.0
B_CELL_NAIVE_13
28.8
B_CELL_NAIVE_14
28.6
B_CELL_NAIVE_15
28.5
B_CELL_NAIVE_16
28.2
B_CELL_NAIVE_17
28.0
B_CELL_NAIVE_18
28.0
B_CELL_NAIVE_19
27.9
B_CELL_NAIVE_20
27.9
B_CELL_NAIVE_21
27.8
B_CELL_NAIVE_22
27.7
B_CELL_NAIVE_23
27.7
B_CELL_NAIVE_24
27.6
B_CELL_NAIVE_25
27.4
B_CELL_NAIVE_26
27.3
B_CELL_NAIVE_27
27.2
B_CELL_NAIVE_28
27.2
B_CELL_NAIVE_29
26.7
B_CELL_NAIVE_30
26.7
B_CELL_NAIVE_31
26.5
B_CELL_NAIVE_32
26.5
B_CELL_NAIVE_33
26.3
B_CELL_NAIVE_34
26.2
B_CELL_NAIVE_35
26.2
B_CELL_NAIVE_36
26.1
B_CELL_NAIVE_37
26.0
B_CELL_NAIVE_38
26.0
B_CELL_NAIVE_39
25.8
B_CELL_NAIVE_40
25.8
B_CELL_NAIVE_41
25.4
B_CELL_NAIVE_42
25.1
B_CELL_NAIVE_43
25.1
B_CELL_NAIVE_44
25.0
B_CELL_NAIVE_45
24.9
B_CELL_NAIVE_46
24.8
B_CELL_NAIVE_47
24.7
B_CELL_NAIVE_48
24.5
B_CELL_NAIVE_49
24.4
B_CELL_NAIVE_50
24.3
B_CELL_NAIVE_51
24.3
B_CELL_NAIVE_52
24.2
B_CELL_NAIVE_53
24.0
B_CELL_NAIVE_54
23.9
B_CELL_NAIVE_55
23.7
B_CELL_NAIVE_56
23.6
B_CELL_NAIVE_57
23.5
B_CELL_NAIVE_58
23.5
B_CELL_NAIVE_59
23.5
B_CELL_NAIVE_60
23.4
B_CELL_NAIVE_61
23.3
B_CELL_NAIVE_62
23.0
B_CELL_NAIVE_63
23.0
B_CELL_NAIVE_64
22.9
B_CELL_NAIVE_65
22.8
B_CELL_NAIVE_66
22.8
B_CELL_NAIVE_67
22.8
B_CELL_NAIVE_68
22.6
B_CELL_NAIVE_69
22.3
B_CELL_NAIVE_70
22.3
B_CELL_NAIVE_71
22.1
B_CELL_NAIVE_72
22.0
B_CELL_NAIVE_73
22.0
B_CELL_NAIVE_74
21.9
B_CELL_NAIVE_75
21.6
B_CELL_NAIVE_76
21.4
B_CELL_NAIVE_77
20.8
B_CELL_NAIVE_78
20.8
B_CELL_NAIVE_79
20.7
B_CELL_NAIVE_80
20.6
B_CELL_NAIVE_81
20.4
B_CELL_NAIVE_82
20.4
B_CELL_NAIVE_83
20.4
B_CELL_NAIVE_84
20.2
B_CELL_NAIVE_85
19.9
B_CELL_NAIVE_86
19.8
B_CELL_NAIVE_87
19.7
B_CELL_NAIVE_88
18.4
B_CELL_NAIVE_89
18.2
B_CELL_NAIVE_90
17.8
B_CELL_NAIVE_91
17.6
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The Human Protein Atlas project is funded
