A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
27.5
nTPM
Monaco:
13.4
nTPM
Schmiedel:
39.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.5
HPA sample
nTPM
Classical monocyte nTPM: 27.3
Samples: 6
Max nTPM: 40.1
Min nTPM: 15.8
P10809_1003
15.8
P10809_1020
35.2
P10809_1039
40.1
P10809_1058
24.3
P10809_1080
19.1
P10809_1107
29.0
Intermediate monocyte nTPM: 27.5
Samples: 6
Max nTPM: 38.4
Min nTPM: 16.5
P10809_1004
18.5
P10809_1023
35.1
P10809_1042
35.8
P10809_1061
20.7
P10809_1081
16.5
P10809_1108
38.4
Non-classical monocyte nTPM: 19.8
Samples: 5
Max nTPM: 38.6
Min nTPM: 0.6
P10809_1005
18.0
P10809_1053
24.7
P10809_1072
0.6
P10809_1082
17.2
P10809_1109
38.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.4
Monaco sample
nTPM
Classical monocyte nTPM: 13.4
Samples: 4
Max nTPM: 19.8
Min nTPM: 8.0
RHH5313_R3680
19.8
RHH5221_R3593
8.0
RHH5250_R3622
8.0
RHH5279_R3651
17.8
Intermediate monocyte nTPM: 12.2
Samples: 4
Max nTPM: 13.7
Min nTPM: 9.9
RHH5314_R3681
13.7
RHH5222_R3594
9.9
RHH5251_R3623
12.5
RHH5280_R3652
12.7
Non-classical monocyte nTPM: 10.5
Samples: 4
Max nTPM: 13.5
Min nTPM: 6.7
RHH5315_R3682
13.5
RHH5223_R3595
6.7
RHH5252_R3624
10.1
RHH5281_R3653
11.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.1
Schmiedel sample id
TPM
Classical monocyte TPM: 27.7
Samples: 91
Max TPM: 41.2
Min TPM: 21.3
MONOCYTES_1
41.2
MONOCYTES_2
37.0
MONOCYTES_3
36.6
MONOCYTES_4
35.2
MONOCYTES_5
34.5
MONOCYTES_6
32.9
MONOCYTES_7
32.6
MONOCYTES_8
32.1
MONOCYTES_9
32.0
MONOCYTES_10
31.5
MONOCYTES_11
31.3
MONOCYTES_12
30.9
MONOCYTES_13
30.9
MONOCYTES_14
30.8
MONOCYTES_15
30.6
MONOCYTES_16
30.5
MONOCYTES_17
30.3
MONOCYTES_18
29.8
MONOCYTES_19
29.5
MONOCYTES_20
29.5
MONOCYTES_21
29.5
MONOCYTES_22
29.4
MONOCYTES_23
29.3
MONOCYTES_24
29.0
MONOCYTES_25
29.0
MONOCYTES_26
29.0
MONOCYTES_27
29.0
MONOCYTES_28
28.9
MONOCYTES_29
28.7
MONOCYTES_30
28.7
MONOCYTES_31
28.5
MONOCYTES_32
28.5
MONOCYTES_33
28.3
MONOCYTES_34
28.3
MONOCYTES_35
28.3
MONOCYTES_36
28.1
MONOCYTES_37
28.1
MONOCYTES_38
28.1
MONOCYTES_39
28.1
MONOCYTES_40
27.6
MONOCYTES_41
27.5
MONOCYTES_42
27.4
MONOCYTES_43
27.4
MONOCYTES_44
27.3
MONOCYTES_45
27.2
MONOCYTES_46
27.2
MONOCYTES_47
27.1
MONOCYTES_48
27.1
MONOCYTES_49
27.0
MONOCYTES_50
26.9
MONOCYTES_51
26.9
MONOCYTES_52
26.8
MONOCYTES_53
26.8
MONOCYTES_54
26.7
MONOCYTES_55
26.7
MONOCYTES_56
26.6
MONOCYTES_57
26.5
MONOCYTES_58
26.5
MONOCYTES_59
26.5
MONOCYTES_60
26.5
MONOCYTES_61
26.4
MONOCYTES_62
26.4
MONOCYTES_63
26.2
MONOCYTES_64
26.1
MONOCYTES_65
26.1
MONOCYTES_66
26.0
MONOCYTES_67
25.7
MONOCYTES_68
25.7
MONOCYTES_69
25.6
MONOCYTES_70
25.5
MONOCYTES_71
25.5
MONOCYTES_72
25.4
MONOCYTES_73
25.1
MONOCYTES_74
25.1
MONOCYTES_75
24.8
MONOCYTES_76
24.6
MONOCYTES_77
24.5
MONOCYTES_78
24.2
MONOCYTES_79
24.1
MONOCYTES_80
23.9
MONOCYTES_81
23.8
MONOCYTES_82
23.8
MONOCYTES_83
23.6
MONOCYTES_84
23.6
MONOCYTES_85
23.2
MONOCYTES_86
23.2
MONOCYTES_87
23.1
MONOCYTES_88
22.9
MONOCYTES_89
22.1
MONOCYTES_90
21.6
MONOCYTES_91
21.3
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Non-classical monocyte TPM: 39.1
Samples: 90
Max TPM: 51.7
Min TPM: 28.9
M2_1
51.7
M2_2
51.0
M2_3
50.5
M2_4
49.8
M2_5
48.7
M2_6
46.8
M2_7
46.7
M2_8
46.3
M2_9
45.8
M2_10
45.5
M2_11
45.2
M2_12
45.1
M2_13
44.9
M2_14
44.8
M2_15
44.8
M2_16
44.4
M2_17
44.4
M2_18
44.4
M2_19
43.7
M2_20
43.5
M2_21
43.4
M2_22
43.4
M2_23
43.3
M2_24
43.2
M2_25
42.4
M2_26
42.2
M2_27
42.1
M2_28
42.0
M2_29
41.6
M2_30
41.6
M2_31
41.5
M2_32
41.2
M2_33
41.2
M2_34
41.0
M2_35
40.9
M2_36
40.7
M2_37
40.6
M2_38
40.6
M2_39
40.1
M2_40
40.0
M2_41
39.9
M2_42
39.8
M2_43
39.8
M2_44
39.6
M2_45
39.5
M2_46
39.1
M2_47
39.0
M2_48
38.6
M2_49
38.5
M2_50
38.5
M2_51
38.1
M2_52
38.0
M2_53
37.9
M2_54
37.9
M2_55
36.8
M2_56
36.7
M2_57
36.6
M2_58
36.6
M2_59
36.5
M2_60
35.9
M2_61
35.7
M2_62
35.6
M2_63
35.6
M2_64
35.6
M2_65
35.4
M2_66
35.4
M2_67
35.4
M2_68
35.1
M2_69
34.9
M2_70
34.8
M2_71
34.8
M2_72
34.6
M2_73
34.6
M2_74
33.9
M2_75
33.5
M2_76
33.4
M2_77
33.3
M2_78
32.6
M2_79
32.3
M2_80
32.2
M2_81
32.1
M2_82
31.9
M2_83
31.7
M2_84
30.9
M2_85
30.9
M2_86
30.2
M2_87
29.2
M2_88
29.2
M2_89
29.0
M2_90
28.9
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