On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
251.2
nTPM
HPA Brain:
554.5
nTPM
GTEx:
251.2
nTPM
FANTOM5:
471.3
Scaled Tags Per Million
Macaque:
781.4
nTPM
Mouse:
437.9
nTPM
Rat:
424.0
nTPM
Pig:
524.2
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
554.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 380.0
2219
Male, age 76, both hemispheres
471.7
1827
Male, age 72, unknown
460.1
2666
Male, age 74, left hemisphere
454.5
2411
Female, age 72, unknown
407.3
2828
Female, age 72, unknown
398.2
1833
Male, age 53, unknown
354.8
2019
Male, age 18, unknown
330.3
2586
Male, age 75, left hemisphere
325.2
1870
Female, age 42, unknown
310.6
1830
Male, age 51, unknown
287.7
Dorsal raphe nucleus nTPM: 315.8
2750
Male, age 76, both hemispheres
388.6
2298
Female, age 72, unknown
383.9
2047
Male, age 72, unknown
297.4
1828
Male, age 53, unknown
277.1
2016
Female, age 72, unknown
231.9
Inferior colliculus nTPM: 307.3
2097
Female, age 72, unknown
349.1
2849
Male, age 72, unknown
323.3
1890
Male, age 53, unknown
287.9
1848
Female, age 42, unknown
268.7
Median raphe nucleus nTPM: 554.5
2220
Male, age 76, midline
554.5
Periaquaductal grey, anterior nTPM: 417.8
1947
Male, age 18, unknown
443.1
1795
Male, age 51, unknown
433.4
2502
Female, age 75, unknown
376.9
Periaquaductal grey, dorsal nTPM: 319.5
1831
Male, age 72, unknown
357.7
2850
Male, age 76, both hemispheres
332.9
2464
Female, age 72, unknown
295.4
1840
Male, age 53, unknown
292.1
Periaquaductal grey, lateral nTPM: 281.2
2053
Male, age 18, unknown
293.5
2140
Male, age 76, both hemispheres
280.6
2272
Male, age 74, both hemispheres
269.7
Pretectal area nTPM: 440.4
1816
Male, age 51, unknown
679.7
1815
Male, age 53, unknown
592.8
1817
Female, age 42, unknown
562.3
1944
Female, age 72, unknown
517.0
2007
Male, age 72, unknown
513.8
2667
Female, age 75, unknown
461.6
2224
Female, age 72, unknown
353.8
2825
Male, age 18, unknown
343.7
2407
Male, age 75, both hemispheres
321.1
2316
Male, age 76, right hemisphere
261.1
2273
Male, age 74, both hemispheres
237.7
Red nucleus nTPM: 326.5
2725
Female, age 75, unknown
402.8
2584
Male, age 75, left hemisphere
394.7
2588
Male, age 74, left hemisphere
368.8
1821
Female, age 72, unknown
344.7
2785
Male, age 18, unknown
339.4
2823
Male, age 76, right hemisphere
313.7
2503
Female, age 72, unknown
313.2
1904
Male, age 53, unknown
308.3
1954
Female, age 42, unknown
305.9
2769
Male, age 72, unknown
277.1
1865
Male, age 51, unknown
275.8
2227
Male, age 72, unknown
273.8
Substantia nigra nTPM: 446.7
1916
Female, age 42, unknown
601.6
1851
Male, age 51, unknown
500.8
1889
Female, age 72, unknown
475.6
1941
Male, age 53, unknown
470.9
2665
Male, age 74, both hemispheres
470.8
2241
Male, age 72, unknown
446.6
2699
Male, age 18, unknown
427.1
2409
Female, age 72, unknown
407.0
2583
Male, age 75, right hemisphere
337.0
2590
Female, age 75, unknown
329.6
Superior colliculus nTPM: 364.0
2087
Female, age 72, unknown
477.6
2261
Male, age 18, unknown
437.9
1796
Male, age 53, unknown
436.3
2668
Female, age 75, unknown
385.2
2664
Male, age 75, both hemispheres
361.0
1913
Female, age 42, unknown
336.3
1895
Male, age 76, right hemisphere
326.5
1839
Male, age 51, unknown
307.2
2587
Male, age 74, left hemisphere
289.2
1995
Male, age 72, unknown
283.3
Ventral tegmental area nTPM: 427.8
2218
Male, age 76, both hemispheres
590.6
2410
Female, age 72, unknown
489.3
1915
Female, age 42, unknown
438.4
1942
Male, age 51, unknown
387.7
2223
Female, age 72, unknown
336.2
2021
Male, age 53, unknown
324.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
251.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 251.2
Samples: 183
Max nTPM: 689.9
Min nTPM: 105.0
Std nTPM: 119.2
Median nTPM: 216.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
689.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
660.8
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
635.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
623.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
586.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
553.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
532.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
531.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
518.8
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
508.4
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
508.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
498.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
477.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
473.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
467.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
431.1
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
430.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
417.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
400.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
398.8
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
390.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
384.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
384.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
382.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
379.7
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
373.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
371.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
370.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
368.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
363.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
348.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
348.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
346.4
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
340.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
328.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
328.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
326.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
323.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
323.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
322.1
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
321.6
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
320.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
312.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
309.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
309.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
307.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
305.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
293.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
293.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
291.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
287.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
284.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
283.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
281.7
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
281.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
280.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
280.7
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
279.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
278.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
278.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
276.9
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
274.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
274.3
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
267.8
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
265.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
264.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
261.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
257.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
255.1
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
251.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
245.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
245.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
243.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
242.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
241.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
237.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
235.2
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
233.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
232.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
230.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
230.0
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
228.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
227.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
227.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
225.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
223.5
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
221.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
219.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
218.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
218.7
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
218.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
216.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
215.3
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
214.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
213.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
211.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
209.3
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
205.3
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
204.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
203.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
202.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
201.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
201.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
198.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
196.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
194.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
194.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
193.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
191.9
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
191.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
190.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
189.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
188.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
187.0
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
186.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
186.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
185.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
184.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
184.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
184.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
181.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
181.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
180.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
180.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
180.3
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
174.4
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
173.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
171.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
171.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
170.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
170.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
170.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
169.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
168.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
168.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
166.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
164.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
163.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
161.1
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
160.0
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
158.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
157.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
157.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
156.2
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
156.1
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
155.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
155.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
153.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
153.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
153.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
152.8
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
152.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
151.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
151.3
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
149.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
149.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
146.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
145.5
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
144.3
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
143.7
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
143.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
143.1
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
142.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
142.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
142.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
140.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
140.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
139.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
139.0
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
137.3
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
132.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
131.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
130.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
127.4
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
127.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
120.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
117.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
114.3
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
113.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
112.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
107.5
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
106.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
105.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
781.4
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 637.2
Samples: 1
Max nTPM: 637.2
Min nTPM: 637.2
Sample A
637.2
Midbrain nTPM: 504.9
Samples: 1
Max nTPM: 504.9
Min nTPM: 504.9
Sample A
504.9
Superior colliculi nTPM: 781.4
Samples: 1
Max nTPM: 781.4
Min nTPM: 781.4
Sample A
781.4
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
524.2
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 510.0
Samples: 3
Max nTPM: 676.3
Min nTPM: 302.7
Sample A
Female
551.1
Sample B
Female
302.7
Sample C
Male
676.3
Midbrain nTPM: 524.2
Samples: 3
Max nTPM: 781.8
Min nTPM: 357.2
Sample B
Female
357.2
Sample C
Male
781.8
Sample D
Male
433.7
Periaqueductal gray nTPM: 300.0
Samples: 3
Max nTPM: 369.1
Min nTPM: 251.5
Sample B
Female
279.5
Sample C
Male
369.1
Sample D
Male
251.5
Superior colliculi nTPM: 466.3
Samples: 4
Max nTPM: 653.0
Min nTPM: 248.0
Sample A
Female
462.8
Sample B
Female
248.0
Sample C
Male
653.0
Sample D
Male
501.3
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
437.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 437.9
Samples: 4
Max nTPM: 464.9
Min nTPM: 421.2
Sample A
421.2
Sample B
464.9
Sample C
438.6
Sample D
426.8
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
424.0
Rat sample
Sample description
nTPM
Midbrain nTPM: 424.0
Samples: 4
Max nTPM: 446.6
Min nTPM: 409.7
Sample A
416.7
Sample A
446.6
Sample A
423.1
Sample A
409.7
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The Human Protein Atlas project is funded
