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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

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  • EVOLUTION

  • VAMP2
EVOLUTIONARY AMYGDALA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Protein evolution
Brain
Evolutionary methods
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

70.172
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:321.7 nTPM
HPA Brain:447.0 nTPM
GTEx:321.7 nTPM
FANTOM5:867.3 Scaled Tags Per Million
Macaque:771.4 nTPM
Mouse:812.8 nTPM
Rat:700.5 nTPM
Pig:490.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody CAB078785
Amygdala mean intensity 70.172
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Nucleus of the lateral olfactory tract 70.172
Basal medial amygdaloid nucleus 53.496
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 32.282
Cortical amygdala 53.086
Central amygdala 40.993
Medial amygdaloid nucleus 50.808

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

447.0
Sample id Sample description nTPM
Basal amygdala
nTPM: 447.0
2685 Female, age 94, left hemisphere 536.7
2243 Female, age 91, right hemisphere 528.5
1955 Male, age 76, both hemispheres 466.7
2110 Male, age 80, left hemisphere 439.7
2827 Female, age 67, right hemisphere 384.3
2609 Male, age 75, right hemisphere 326.3
Central amygdala
nTPM: 432.4
2239 Male, age 80, left hemisphere 501.7
1905 Male, age 76, both hemispheres 476.9
2701 Female, age 91, right hemisphere 442.4
2826 Female, age 94, left hemisphere 424.5
2515 Male, age 75, right hemisphere 316.6
Corticomedial amygdala
nTPM: 438.3
2829 Male, age 80, left hemisphere 523.0
2242 Female, age 91, right hemisphere 488.9
2240 Male, age 76, both hemispheres 477.1
2429 Female, age 94, left hemisphere 438.2
2535 Female, age 67, right hemisphere 401.1
2428 Male, age 75, right hemisphere 301.5
Lateral amygdala
nTPM: 416.3
1883 Male, age 76, both hemispheres 502.5
2534 Female, age 94, left hemisphere 496.4
2256 Male, age 80, left hemisphere 430.2
2255 Female, age 91, right hemisphere 429.2
2830 Female, age 67, right hemisphere 336.2
2516 Male, age 75, right hemisphere 303.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

321.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 321.7
Samples: 181

Max nTPM: 1023.8
Min nTPM: 139.5
Std nTPM: 133.0
Median nTPM: 299.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1023.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 811.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 769.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 762.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 694.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 630.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 588.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 530.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 528.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 528.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 526.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 518.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 512.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 511.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 502.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 498.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 485.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 484.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 481.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 456.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 456.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 455.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 451.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 441.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 440.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 437.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 436.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 430.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 429.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 428.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 426.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 423.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 421.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 413.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 413.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 413.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 412.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 411.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 410.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 407.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 404.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 396.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 392.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 392.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 381.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 380.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 379.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 378.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 377.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 376.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 372.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 372.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 368.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 368.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 367.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 366.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 360.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 359.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 358.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 358.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 357.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 356.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 354.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 351.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 351.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 348.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 346.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 345.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 343.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 343.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 341.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 340.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 334.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 333.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 333.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 331.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 330.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 323.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 323.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 321.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 319.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 317.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 315.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 313.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 310.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 309.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 307.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 305.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 304.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 299.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 299.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 298.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 297.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 296.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 295.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 291.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 289.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 288.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 285.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 284.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 283.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 282.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 273.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 273.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 269.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 268.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 260.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 260.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 260.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 259.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 257.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 252.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 252.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 251.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 249.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 248.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 246.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 246.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 244.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 244.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 242.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 242.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 239.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 238.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 237.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 236.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 236.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 236.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 234.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 233.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 232.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 231.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 231.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 230.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 227.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 226.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 225.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 225.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 223.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 222.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 219.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 219.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 217.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 216.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 215.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 214.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 214.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 213.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 211.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 206.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 206.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 203.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 202.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 197.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 197.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 196.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 196.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 195.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 193.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 192.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 189.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 189.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 189.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 182.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 182.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 181.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 177.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 174.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 172.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 171.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 170.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 160.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 160.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 159.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 159.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 154.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 153.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 149.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 143.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 143.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 139.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

867.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 867.3
FF:10151-102I7 76 years, female 867.3

AMYGDALA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

771.4
Macaque sample Sample description nTPM
Amygdala
nTPM: 771.5
Samples: 2

Max nTPM: 827.0
Min nTPM: 715.9
Sample A 827.0
Sample B 715.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

490.0
Pig sample Sample description nTPM
Amygdala
nTPM: 490.1
Samples: 4

Max nTPM: 701.9
Min nTPM: 377.3
Sample A Female 701.9
Sample B Female 377.3
Sample C Male 456.7
Sample D Male 424.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

812.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 812.8
Samples: 4

Max nTPM: 832.1
Min nTPM: 791.0
Sample A 791.0
Sample B 810.6
Sample C 832.1
Sample D 817.6

AMYGDALA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

700.5
Rat sample Sample description nTPM
Amygdala
nTPM: 700.5
Samples: 4

Max nTPM: 761.9
Min nTPM: 561.4
Sample A 761.9
Sample A 755.4
Sample A 723.3
Sample A 561.4

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