We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
VAMP2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • VAMP2
TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:164.1 nTPM
HPA Brain:300.9 nTPM
GTEx:164.1 nTPM
FANTOM5:386.7 Scaled Tags Per Million
Pig:221.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

300.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 268.3
2194 Female, age 79, both hemispheres 338.1
2565 Male, age 75, midline 303.2
2816 Male, age 47, midline 272.4
1981 Female, age 72, midline 227.0
2048 Male, age 55, midline 200.8
Cervical spinal cord, dorsal horn
nTPM: 300.9
2297 Male, age 75, both hemispheres 456.3
2069 Male, age 47, both hemispheres 301.7
1877 Male, age 55, unknown 297.7
2296 Male, age 66, both hemispheres 273.0
2721 Male, age 90, both hemispheres 270.4
2173 Female, age 72, unknown 206.3
Cervical spinal cord, ventral horn
nTPM: 253.3
2820 Female, age 79, both hemispheres 304.7
2068 Male, age 55, unknown 292.0
2480 Male, age 75, both hemispheres 289.4
2295 Male, age 66, both hemispheres 261.1
2809 Male, age 90, both hemispheres 219.3
2098 Female, age 72, unknown 153.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 164.1
Samples: 204

Max nTPM: 288.1
Min nTPM: 89.4
Std nTPM: 31.2
Median nTPM: 160.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 288.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 254.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 244.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 243.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 243.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 243.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 240.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 237.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 232.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 232.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 228.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 225.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 224.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 218.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 218.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 210.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 205.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 205.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 205.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 204.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 204.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 203.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 201.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 200.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 199.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 199.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 197.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 197.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 197.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 194.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 193.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 192.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 192.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 192.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 192.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 191.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 189.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 188.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 188.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 186.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 186.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 186.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 186.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 184.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 184.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 184.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 184.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 184.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 183.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 183.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 182.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 182.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 179.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 178.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 178.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 177.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 177.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 176.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 176.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 175.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 175.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 174.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 173.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 172.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 171.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 171.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 171.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 170.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 170.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 169.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 169.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 169.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 169.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 168.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 168.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 168.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 167.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 167.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 167.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 167.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 167.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 166.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 166.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 165.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 165.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 164.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 164.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 164.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 164.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 164.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 164.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 164.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 163.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 163.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 162.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 162.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 162.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 161.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 161.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 161.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 160.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 160.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 160.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 160.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 160.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 159.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 159.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 159.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 158.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 158.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 156.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 156.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 156.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 156.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 154.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 154.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 154.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 154.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 154.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 154.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 153.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 153.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 153.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 152.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 152.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 152.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 151.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 151.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 151.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 150.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 150.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 150.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 149.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 149.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 149.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 149.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 149.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 148.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 148.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 146.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 146.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 145.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 144.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 144.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 144.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 144.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 143.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 143.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 142.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 142.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 142.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 142.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 142.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 142.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 141.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 141.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 141.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 140.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 140.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 140.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 140.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 139.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 139.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 139.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 139.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 138.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 138.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 137.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 137.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 137.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 135.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 135.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 135.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 135.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 134.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 133.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 133.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 133.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 131.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 131.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 130.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 130.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 129.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 128.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 128.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 127.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 126.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 126.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 126.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 125.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 124.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 123.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 122.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 122.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 122.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 121.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 120.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 115.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 114.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 113.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 111.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 110.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 107.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 89.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

386.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 386.7
FF:10159-103A6 76 years, female 408.4
FF:10181-103D1 60 years, female 365.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 221.1
Samples: 4

Max nTPM: 287.4
Min nTPM: 159.0
Sample A Female 287.4
Sample B Female 186.7
Sample C Male 159.0
Sample D Male 251.1
Ventral spinal cord
nTPM: 214.3
Samples: 4

Max nTPM: 262.0
Min nTPM: 161.6
Sample A Female 262.0
Sample B Female 161.6
Sample C Male 212.2
Sample D Male 221.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo