MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:152.3 nTPM
HPA Brain:201.1 nTPM
GTEx:152.3 nTPM
FANTOM5:276.4 Scaled Tags Per Million
Pig:173.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 201.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 201.1
2586 Male, age 75, left hemisphere 368.4
2828 Female, age 72, unknown 250.4
1833 Male, age 53, unknown 188.4
1870 Female, age 42, unknown 187.1
1830 Male, age 51, unknown 182.0
2666 Male, age 74, left hemisphere 181.1
2219 Male, age 76, both hemispheres 174.0
1827 Male, age 72, unknown 168.2
2411 Female, age 72, unknown 164.5
2019 Male, age 18, unknown 147.0
Dorsal raphe nucleus
nTPM: 198.8
2016 Female, age 72, unknown 215.6
2750 Male, age 76, both hemispheres 214.8
2047 Male, age 72, unknown 209.7
1828 Male, age 53, unknown 191.5
2298 Female, age 72, unknown 162.3
Inferior colliculus
nTPM: 175.3
2849 Male, age 72, unknown 196.3
1848 Female, age 42, unknown 189.1
1890 Male, age 53, unknown 172.2
2097 Female, age 72, unknown 143.5
Median raphe nucleus
nTPM: 151.6
2220 Male, age 76, midline 151.6
Periaquaductal grey, anterior
nTPM: 191.4
1795 Male, age 51, unknown 194.7
2502 Female, age 75, unknown 193.8
1947 Male, age 18, unknown 185.7
Periaquaductal grey, dorsal
nTPM: 186.6
1840 Male, age 53, unknown 209.2
2850 Male, age 76, both hemispheres 197.5
2464 Female, age 72, unknown 175.0
1831 Male, age 72, unknown 164.5
Periaquaductal grey, lateral
nTPM: 181.0
2053 Male, age 18, unknown 195.3
2140 Male, age 76, both hemispheres 186.6
2272 Male, age 74, both hemispheres 161.1
Pretectal area
nTPM: 177.6
2825 Male, age 18, unknown 200.0
2667 Female, age 75, unknown 190.7
2273 Male, age 74, both hemispheres 189.4
1815 Male, age 53, unknown 185.6
1944 Female, age 72, unknown 181.3
1816 Male, age 51, unknown 178.1
1817 Female, age 42, unknown 176.3
2407 Male, age 75, both hemispheres 171.2
2316 Male, age 76, right hemisphere 168.1
2007 Male, age 72, unknown 156.9
2224 Female, age 72, unknown 156.5
Red nucleus
nTPM: 193.4
2769 Male, age 72, unknown 221.8
2227 Male, age 72, unknown 214.4
2503 Female, age 72, unknown 210.6
2584 Male, age 75, left hemisphere 203.9
2588 Male, age 74, left hemisphere 200.8
2823 Male, age 76, right hemisphere 197.9
1904 Male, age 53, unknown 191.8
1865 Male, age 51, unknown 184.9
1954 Female, age 42, unknown 179.9
1821 Female, age 72, unknown 179.1
2785 Male, age 18, unknown 174.2
2725 Female, age 75, unknown 161.9
Substantia nigra
nTPM: 182.5
2699 Male, age 18, unknown 229.3
1916 Female, age 42, unknown 206.2
2583 Male, age 75, right hemisphere 199.9
1851 Male, age 51, unknown 192.4
2665 Male, age 74, both hemispheres 188.9
2590 Female, age 75, unknown 172.0
1889 Female, age 72, unknown 163.1
1941 Male, age 53, unknown 162.4
2241 Male, age 72, unknown 161.3
2409 Female, age 72, unknown 149.4
Superior colliculus
nTPM: 198.1
2664 Male, age 75, both hemispheres 289.2
2668 Female, age 75, unknown 224.0
1995 Male, age 72, unknown 210.2
1913 Female, age 42, unknown 197.0
1839 Male, age 51, unknown 190.7
2261 Male, age 18, unknown 189.6
1796 Male, age 53, unknown 185.3
2087 Female, age 72, unknown 174.6
2587 Male, age 74, left hemisphere 172.5
1895 Male, age 76, right hemisphere 147.4
Ventral tegmental area
nTPM: 183.5
2021 Male, age 53, unknown 196.5
2223 Female, age 72, unknown 196.0
1942 Male, age 51, unknown 191.3
1915 Female, age 42, unknown 187.7
2410 Female, age 72, unknown 168.2
2218 Male, age 76, both hemispheres 161.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 152.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 152.3
Samples: 183

Max nTPM: 291.0
Min nTPM: 38.9
Std nTPM: 46.0
Median nTPM: 147.9
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 291.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 279.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 276.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 274.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 265.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 256.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 251.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 248.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 247.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 241.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 237.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 276.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 276.4
FF:10158-103A5 76 years, female 276.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 173.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 156.5
Samples: 4

Max nTPM: 194.9
Min nTPM: 128.2
Sample A Female 157.8
Sample B Female 128.2
Sample C Male 145.0
Sample D Male 194.9
Midbrain
nTPM: 173.7
Samples: 4

Max nTPM: 348.7
Min nTPM: 95.6
Sample A Female 348.7
Sample B Female 127.3
Sample C Male 123.2
Sample D Male 95.6
Periaqueductal gray
nTPM: 126.1
Samples: 3

Max nTPM: 130.9
Min nTPM: 120.0
Sample B Female 130.9
Sample C Male 120.0
Sample D Male 127.5
Superior colliculi
nTPM: 113.4
Samples: 4

Max nTPM: 144.8
Min nTPM: 65.5
Sample A Female 123.0
Sample B Female 65.5
Sample C Male 120.3
Sample D Male 144.8

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo