MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:109795.8 nTPM
HPA Brain:84438.6 nTPM
GTEx:109795.8 nTPM
Pig:27368.5 nTPM
Mouse:7581.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 84438.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41035.3
2219 Male, age 76, both hemispheres 110593.7
1833 Male, age 53, unknown 47114.2
2666 Male, age 74, left hemisphere 44086.9
1830 Male, age 51, unknown 42517.4
2828 Female, age 72, unknown 36318.5
2586 Male, age 75, left hemisphere 35585.9
1827 Male, age 72, unknown 26008.1
1870 Female, age 42, unknown 25933.1
2019 Male, age 18, unknown 22137.2
2411 Female, age 72, unknown 20058.2
Dorsal raphe nucleus
nTPM: 20952.7
1828 Male, age 53, unknown 36411.7
2750 Male, age 76, both hemispheres 27710.1
2047 Male, age 72, unknown 15909.9
2016 Female, age 72, unknown 15826.0
2298 Female, age 72, unknown 8906.0
Inferior colliculus
nTPM: 33669.9
2849 Male, age 72, unknown 76211.5
1890 Male, age 53, unknown 24917.8
1848 Female, age 42, unknown 19797.7
2097 Female, age 72, unknown 13752.5
Median raphe nucleus
nTPM: 84438.6
2220 Male, age 76, midline 84438.6
Periaquaductal grey, anterior
nTPM: 25732.0
2502 Female, age 75, unknown 39280.0
1795 Male, age 51, unknown 20311.0
1947 Male, age 18, unknown 17605.0
Periaquaductal grey, dorsal
nTPM: 38606.0
2850 Male, age 76, both hemispheres 78092.7
2464 Female, age 72, unknown 34355.8
1831 Male, age 72, unknown 28088.9
1840 Male, age 53, unknown 13886.6
Periaquaductal grey, lateral
nTPM: 20588.7
2140 Male, age 76, both hemispheres 27383.9
2053 Male, age 18, unknown 17393.8
2272 Male, age 74, both hemispheres 16988.4
Pretectal area
nTPM: 30601.4
1815 Male, age 53, unknown 46483.1
1816 Male, age 51, unknown 46265.7
1817 Female, age 42, unknown 43471.9
2667 Female, age 75, unknown 39957.0
1944 Female, age 72, unknown 35322.8
2825 Male, age 18, unknown 34864.1
2007 Male, age 72, unknown 23350.9
2407 Male, age 75, both hemispheres 20925.9
2224 Female, age 72, unknown 20238.3
2273 Male, age 74, both hemispheres 13172.3
2316 Male, age 76, right hemisphere 12563.2
Red nucleus
nTPM: 32721.7
2503 Female, age 72, unknown 50108.5
1954 Female, age 42, unknown 39475.2
2823 Male, age 76, right hemisphere 38438.9
2227 Male, age 72, unknown 35268.6
2785 Male, age 18, unknown 32083.6
2588 Male, age 74, left hemisphere 32032.9
2725 Female, age 75, unknown 28914.3
2769 Male, age 72, unknown 28743.0
1865 Male, age 51, unknown 28374.6
2584 Male, age 75, left hemisphere 28142.5
1904 Male, age 53, unknown 27989.0
1821 Female, age 72, unknown 23089.5
Substantia nigra
nTPM: 36911.7
2699 Male, age 18, unknown 73095.5
2665 Male, age 74, both hemispheres 64961.5
1916 Female, age 42, unknown 44381.1
1941 Male, age 53, unknown 43152.9
2409 Female, age 72, unknown 34080.0
2241 Male, age 72, unknown 28153.4
2583 Male, age 75, right hemisphere 21756.5
1889 Female, age 72, unknown 21134.8
1851 Male, age 51, unknown 20322.0
2590 Female, age 75, unknown 18079.8
Superior colliculus
nTPM: 26668.9
2664 Male, age 75, both hemispheres 33750.9
2087 Female, age 72, unknown 32921.4
1839 Male, age 51, unknown 32352.4
1913 Female, age 42, unknown 30219.9
2587 Male, age 74, left hemisphere 24287.9
2261 Male, age 18, unknown 24213.9
1995 Male, age 72, unknown 24087.4
1895 Male, age 76, right hemisphere 23463.8
2668 Female, age 75, unknown 22556.5
1796 Male, age 53, unknown 18835.1
Ventral tegmental area
nTPM: 40028.3
2218 Male, age 76, both hemispheres 78126.8
2223 Female, age 72, unknown 53593.7
1942 Male, age 51, unknown 32367.7
1915 Female, age 42, unknown 25904.9
2021 Male, age 53, unknown 25493.8
2410 Female, age 72, unknown 24683.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 109795.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109795.8
Samples: 183

Max nTPM: 420732.9
Min nTPM: 5071.1
Std nTPM: 73073.4
Median nTPM: 90154.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 420732.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 387263.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 383735.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 351284.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 330265.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 315565.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 312214.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 280093.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 276883.1
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 249867.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 246336.0
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MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27368.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22774.3
Samples: 4

Max nTPM: 35385.0
Min nTPM: 10310.8
Sample A Female 35385.0
Sample B Female 20527.1
Sample C Male 24874.3
Sample D Male 10310.8
Midbrain
nTPM: 27368.5
Samples: 4

Max nTPM: 43735.5
Min nTPM: 12440.3
Sample A Female 24326.3
Sample B Female 43735.5
Sample C Male 28972.0
Sample D Male 12440.3
Periaqueductal gray
nTPM: 18910.4
Samples: 3

Max nTPM: 21996.8
Min nTPM: 13652.8
Sample B Female 21081.7
Sample C Male 21996.8
Sample D Male 13652.8
Superior colliculi
nTPM: 19517.5
Samples: 4

Max nTPM: 34054.7
Min nTPM: 2174.6
Sample A Female 34054.7
Sample B Female 2174.6
Sample C Male 23563.9
Sample D Male 18276.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7581.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 7581.1
Samples: 4

Max nTPM: 10840.4
Min nTPM: 5038.3
Sample A Male 10840.4
Sample B Male 8526.9
Sample C Female 5918.7
Sample D Female 5038.3

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